miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 1163 0.71 0.425271
Target:  5'- cGAGGCGCAgauccUCACCGaGAACGCgaUGg -3'
miRNA:   3'- -CUCCGCGU-----AGUGGCaCUUGUGgaGCg -5'
12775 5' -55.1 NC_003387.1 + 1277 0.74 0.275599
Target:  5'- cGAGGUGU-UCACgGUGAuGCGCCUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGgCACU-UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 1321 0.73 0.328283
Target:  5'- cAGGCGCucgccgGUCACCGgccGAAUccgaaaucgGCCUCGCu -3'
miRNA:   3'- cUCCGCG------UAGUGGCa--CUUG---------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1617 0.7 0.474646
Target:  5'- cGGGCGCG----UGUGGGCAgCCUCGCg -3'
miRNA:   3'- cUCCGCGUagugGCACUUGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 2348 0.67 0.62487
Target:  5'- cGAGGcCGcCGUCGgCGUcGAGCGCCaCGUa -3'
miRNA:   3'- -CUCC-GC-GUAGUgGCA-CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 2467 0.7 0.44466
Target:  5'- cGAGGUGCAcCGCCcggcgcUGAcguacgGCGCCUCGUa -3'
miRNA:   3'- -CUCCGCGUaGUGGc-----ACU------UGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 3631 0.67 0.658023
Target:  5'- cGGGCGUgcggguAUCGCCGUcGAcCGgCUCGUg -3'
miRNA:   3'- cUCCGCG------UAGUGGCA-CUuGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 4525 0.69 0.548161
Target:  5'- -cGGcCGCcgcCGCCGgugcGGGCACCUUGCg -3'
miRNA:   3'- cuCC-GCGua-GUGGCa---CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 4667 0.72 0.370263
Target:  5'- cGGGGCGCGguaGCgGgUGAACugCUUGCc -3'
miRNA:   3'- -CUCCGCGUag-UGgC-ACUUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 5184 0.68 0.580797
Target:  5'- cGGGGCaggGCAUCaaggcccgGCUGUG-GCGCCUCGg -3'
miRNA:   3'- -CUCCG---CGUAG--------UGGCACuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 5774 0.68 0.558983
Target:  5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3'
miRNA:   3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 6211 0.68 0.602783
Target:  5'- -uGGUGCAgUCGCCGagcgagcugcgGAACACCugaacUCGCa -3'
miRNA:   3'- cuCCGCGU-AGUGGCa----------CUUGUGG-----AGCG- -5'
12775 5' -55.1 NC_003387.1 + 6821 0.66 0.701835
Target:  5'- aAGGCGCGguUCGCCuacgugcuggguGUGAGCGCgacCGCu -3'
miRNA:   3'- cUCCGCGU--AGUGG------------CACUUGUGga-GCG- -5'
12775 5' -55.1 NC_003387.1 + 6861 0.66 0.690956
Target:  5'- -cGGCGCGcaGCCGc-AGCAgCUCGCg -3'
miRNA:   3'- cuCCGCGUagUGGCacUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7346 0.7 0.495187
Target:  5'- cGGGCGCAgcuaacCGCCGgcaaaaacucGAGCGCgUCGCc -3'
miRNA:   3'- cUCCGCGUa-----GUGGCa---------CUUGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7473 0.67 0.669039
Target:  5'- cAGGCG-AUCACCGagccGcGCACC-CGCa -3'
miRNA:   3'- cUCCGCgUAGUGGCa---CuUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 7797 0.71 0.415767
Target:  5'- cGAGGUGCAg-GCCGagcUGcAACGCCUgGCg -3'
miRNA:   3'- -CUCCGCGUagUGGC---AC-UUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 7847 0.68 0.613818
Target:  5'- -cGGCuGCGUCAgcUCGgccAGCACCUUGCg -3'
miRNA:   3'- cuCCG-CGUAGU--GGCac-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8249 0.67 0.669039
Target:  5'- -cGGUcaccCGUCACgcgggCGUGcAGCGCCUCGCg -3'
miRNA:   3'- cuCCGc---GUAGUG-----GCAC-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8612 0.7 0.484864
Target:  5'- uGGGGCGaCGUUACCaagGUGuucGCGgCCUCGCc -3'
miRNA:   3'- -CUCCGC-GUAGUGG---CACu--UGU-GGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.