Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12775 | 5' | -55.1 | NC_003387.1 | + | 50020 | 0.66 | 0.723374 |
Target: 5'- ---cCGCGUCGCCGaGcACaACCUCGCc -3' miRNA: 3'- cuccGCGUAGUGGCaCuUG-UGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 6821 | 0.66 | 0.701835 |
Target: 5'- aAGGCGCGguUCGCCuacgugcuggguGUGAGCGCgacCGCu -3' miRNA: 3'- cUCCGCGU--AGUGG------------CACUUGUGga-GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 40760 | 0.66 | 0.701835 |
Target: 5'- cGGGCGUcgaGUaCACCGagGuGCGCCUCGa -3' miRNA: 3'- cUCCGCG---UA-GUGGCa-CuUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 22965 | 0.66 | 0.735071 |
Target: 5'- uGGGGCGCcccgGUCAUCGUGucgggcGGCGCCgacgacggcaaggccCGCa -3' miRNA: 3'- -CUCCGCG----UAGUGGCAC------UUGUGGa--------------GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 26850 | 0.66 | 0.680021 |
Target: 5'- -cGGCGa---GCUGUGGauGCACCUCGg -3' miRNA: 3'- cuCCGCguagUGGCACU--UGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 25912 | 0.66 | 0.680021 |
Target: 5'- -cGGCGCGcUCACCGac--CACCagCGCg -3' miRNA: 3'- cuCCGCGU-AGUGGCacuuGUGGa-GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 51925 | 0.66 | 0.701835 |
Target: 5'- -uGGcCGaCAUCAUCGUGAccCGgCUCGCu -3' miRNA: 3'- cuCC-GC-GUAGUGGCACUu-GUgGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 32727 | 0.66 | 0.701835 |
Target: 5'- -cGGCGCA-CGgCGcGGugGCCUCGg -3' miRNA: 3'- cuCCGCGUaGUgGCaCUugUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 15564 | 0.66 | 0.690956 |
Target: 5'- gGAGGUGCA--GCCGauucGCGCCUgGCu -3' miRNA: 3'- -CUCCGCGUagUGGCacu-UGUGGAgCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 49574 | 0.66 | 0.701835 |
Target: 5'- cGAGGUGCGcccgCuGCCGggcGGugGCCUgGCa -3' miRNA: 3'- -CUCCGCGUa---G-UGGCa--CUugUGGAgCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 48778 | 0.66 | 0.690956 |
Target: 5'- -cGGCGCAgccagcUCGCCGcUGAuCGCCgcgGCg -3' miRNA: 3'- cuCCGCGU------AGUGGC-ACUuGUGGag-CG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 49968 | 0.66 | 0.690956 |
Target: 5'- -cGGgGCGUUugUGUuGACACCUCa- -3' miRNA: 3'- cuCCgCGUAGugGCAcUUGUGGAGcg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 10724 | 0.66 | 0.723374 |
Target: 5'- cAGGCgGCccCACCGcuUGAGCACCgcgGCg -3' miRNA: 3'- cUCCG-CGuaGUGGC--ACUUGUGGag-CG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 32182 | 0.66 | 0.716947 |
Target: 5'- -cGGCGCA--GCCGacGAACACCgcaggggcaggcgcaUCGCu -3' miRNA: 3'- cuCCGCGUagUGGCa-CUUGUGG---------------AGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 31724 | 0.66 | 0.701835 |
Target: 5'- -cGGCGCuGUCGCCGacgaGAGCua-UCGCg -3' miRNA: 3'- cuCCGCG-UAGUGGCa---CUUGuggAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 15809 | 0.66 | 0.701835 |
Target: 5'- cGGGGUGCcgcuGUCGCCGccgguUGuGACGCCgaCGCg -3' miRNA: 3'- -CUCCGCG----UAGUGGC-----AC-UUGUGGa-GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 22442 | 0.66 | 0.701835 |
Target: 5'- cAGGCGCGg-GCCGcGGcguugGCCUCGCg -3' miRNA: 3'- cUCCGCGUagUGGCaCUug---UGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 26500 | 0.66 | 0.690956 |
Target: 5'- cGGGGCGa--CGCUGUGAaugaaGCGCCgcacgucgUCGCg -3' miRNA: 3'- -CUCCGCguaGUGGCACU-----UGUGG--------AGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 6861 | 0.66 | 0.690956 |
Target: 5'- -cGGCGCGcaGCCGc-AGCAgCUCGCg -3' miRNA: 3'- cuCCGCGUagUGGCacUUGUgGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 18721 | 0.66 | 0.680021 |
Target: 5'- aGGGCGCggCACuCGUcGAGCAgCgggcagCGCa -3' miRNA: 3'- cUCCGCGuaGUG-GCA-CUUGUgGa-----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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