miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 29647 0.74 0.26865
Target:  5'- -cGGCGCGaguaACCGgcugcucGAACGCCUCGCc -3'
miRNA:   3'- cuCCGCGUag--UGGCa------CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14044 0.69 0.516122
Target:  5'- -cGGCGCAcccgcacuuUCAgCGgaUGGGCGCCUgGCa -3'
miRNA:   3'- cuCCGCGU---------AGUgGC--ACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 51728 0.69 0.537405
Target:  5'- --aGCGCAUCcgaccCCGgucGAGCGCCUCGg -3'
miRNA:   3'- cucCGCGUAGu----GGCa--CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 22965 0.66 0.735071
Target:  5'- uGGGGCGCcccgGUCAUCGUGucgggcGGCGCCgacgacggcaaggccCGCa -3'
miRNA:   3'- -CUCCGCG----UAGUGGCAC------UUGUGGa--------------GCG- -5'
12775 5' -55.1 NC_003387.1 + 30768 0.73 0.312504
Target:  5'- cGGGCGUG--ACCGUGuACugCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 26809 0.73 0.33639
Target:  5'- uGGGGCGCcguauUCGCCGUGuuuGGCAUCUUGg -3'
miRNA:   3'- -CUCCGCGu----AGUGGCAC---UUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 19458 0.72 0.36158
Target:  5'- cGGGCGCguGUCAgUGUGGGCGCCgaggccacCGCg -3'
miRNA:   3'- cUCCGCG--UAGUgGCACUUGUGGa-------GCG- -5'
12775 5' -55.1 NC_003387.1 + 33654 0.72 0.379088
Target:  5'- cAGG-GCAUCACCGUG-GC-CCUgGCg -3'
miRNA:   3'- cUCCgCGUAGUGGCACuUGuGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 2467 0.7 0.44466
Target:  5'- cGAGGUGCAcCGCCcggcgcUGAcguacgGCGCCUCGUa -3'
miRNA:   3'- -CUCCGCGUaGUGGc-----ACU------UGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 44281 0.69 0.505608
Target:  5'- --cGCGCGguggcUCGCCGUGucucucgauUACCUCGCg -3'
miRNA:   3'- cucCGCGU-----AGUGGCACuu-------GUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8612 0.7 0.484864
Target:  5'- uGGGGCGaCGUUACCaagGUGuucGCGgCCUCGCc -3'
miRNA:   3'- -CUCCGC-GUAGUGG---CACu--UGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1163 0.71 0.425271
Target:  5'- cGAGGCGCAgauccUCACCGaGAACGCgaUGg -3'
miRNA:   3'- -CUCCGCGU-----AGUGGCaCUUGUGgaGCg -5'
12775 5' -55.1 NC_003387.1 + 1277 0.74 0.275599
Target:  5'- cGAGGUGU-UCACgGUGAuGCGCCUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGgCACU-UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 32049 0.7 0.495187
Target:  5'- cGGGuCGCAagucugUCGCCGccGAGCGCCcguUCGCg -3'
miRNA:   3'- cUCC-GCGU------AGUGGCa-CUUGUGG---AGCG- -5'
12775 5' -55.1 NC_003387.1 + 27311 0.74 0.289928
Target:  5'- aGAGcCGCGUCGCCGUGAuCGCCgCGa -3'
miRNA:   3'- -CUCcGCGUAGUGGCACUuGUGGaGCg -5'
12775 5' -55.1 NC_003387.1 + 7797 0.71 0.415767
Target:  5'- cGAGGUGCAg-GCCGagcUGcAACGCCUgGCg -3'
miRNA:   3'- -CUCCGCGUagUGGC---AC-UUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 25209 0.69 0.505608
Target:  5'- --aGCGCAUCAUgGUGcugacguuuagcGGCACCUCGg -3'
miRNA:   3'- cucCGCGUAGUGgCAC------------UUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 21748 0.69 0.52566
Target:  5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3'
miRNA:   3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 13421 0.74 0.289928
Target:  5'- -cGGCGC-UCGCCGgugUGAACuACCUCGg -3'
miRNA:   3'- cuCCGCGuAGUGGC---ACUUG-UGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 18106 0.73 0.33639
Target:  5'- cGAGGCGCAggaUUAUgCGUGGACGCCguaCGUc -3'
miRNA:   3'- -CUCCGCGU---AGUG-GCACUUGUGGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.