miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 9612 0.68 0.602783
Target:  5'- -cGGCGCcgCGCCGU---CGCgCUCGUa -3'
miRNA:   3'- cuCCGCGuaGUGGCAcuuGUG-GAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14872 0.67 0.646982
Target:  5'- cGAGGCGagcCGCCGggcgcagGggUgcccgACCUCGCu -3'
miRNA:   3'- -CUCCGCguaGUGGCa------CuuG-----UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10510 0.67 0.635927
Target:  5'- -cGGUGCgccgGUCGCCGUc--CugCUCGCg -3'
miRNA:   3'- cuCCGCG----UAGUGGCAcuuGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 2348 0.67 0.62487
Target:  5'- cGAGGcCGcCGUCGgCGUcGAGCGCCaCGUa -3'
miRNA:   3'- -CUCC-GC-GUAGUgGCA-CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 23019 0.67 0.62487
Target:  5'- uGGGCGC--CGCC--GAGCGCCUCGa -3'
miRNA:   3'- cUCCGCGuaGUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 11958 0.68 0.613818
Target:  5'- cGAGGCGCAccUCGgUGUaucGACGCC-CGCc -3'
miRNA:   3'- -CUCCGCGU--AGUgGCAc--UUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 16714 0.68 0.613818
Target:  5'- -cGGCGCAccacgaccUCGCCGUcGAucguGC-CCUCGUc -3'
miRNA:   3'- cuCCGCGU--------AGUGGCA-CU----UGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7847 0.68 0.613818
Target:  5'- -cGGCuGCGUCAgcUCGgccAGCACCUUGCg -3'
miRNA:   3'- cuCCG-CGUAGU--GGCac-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48288 0.68 0.602783
Target:  5'- -cGGCGCGg-GCuCGgcGAACGCCUUGCc -3'
miRNA:   3'- cuCCGCGUagUG-GCa-CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8713 0.67 0.646982
Target:  5'- uGAGGUGCuGUCACCGU---UugCUgGCa -3'
miRNA:   3'- -CUCCGCG-UAGUGGCAcuuGugGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 52029 0.67 0.669039
Target:  5'- -cGGCGCAaugaCGUGGcgcGCgACCUCGCu -3'
miRNA:   3'- cuCCGCGUagugGCACU---UG-UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8249 0.67 0.669039
Target:  5'- -cGGUcaccCGUCACgcgggCGUGcAGCGCCUCGCg -3'
miRNA:   3'- cuCCGc---GUAGUG-----GCAC-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10724 0.66 0.723374
Target:  5'- cAGGCgGCccCACCGcuUGAGCACCgcgGCg -3'
miRNA:   3'- cUCCG-CGuaGUGGC--ACUUGUGGag-CG- -5'
12775 5' -55.1 NC_003387.1 + 32182 0.66 0.716947
Target:  5'- -cGGCGCA--GCCGacGAACACCgcaggggcaggcgcaUCGCu -3'
miRNA:   3'- cuCCGCGUagUGGCa-CUUGUGG---------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 31724 0.66 0.701835
Target:  5'- -cGGCGCuGUCGCCGacgaGAGCua-UCGCg -3'
miRNA:   3'- cuCCGCG-UAGUGGCa---CUUGuggAGCG- -5'
12775 5' -55.1 NC_003387.1 + 15809 0.66 0.701835
Target:  5'- cGGGGUGCcgcuGUCGCCGccgguUGuGACGCCgaCGCg -3'
miRNA:   3'- -CUCCGCG----UAGUGGC-----AC-UUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 22442 0.66 0.701835
Target:  5'- cAGGCGCGg-GCCGcGGcguugGCCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCaCUug---UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 26500 0.66 0.690956
Target:  5'- cGGGGCGa--CGCUGUGAaugaaGCGCCgcacgucgUCGCg -3'
miRNA:   3'- -CUCCGCguaGUGGCACU-----UGUGG--------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 6861 0.66 0.690956
Target:  5'- -cGGCGCGcaGCCGc-AGCAgCUCGCg -3'
miRNA:   3'- cuCCGCGUagUGGCacUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 18721 0.66 0.680021
Target:  5'- aGGGCGCggCACuCGUcGAGCAgCgggcagCGCa -3'
miRNA:   3'- cUCCGCGuaGUG-GCA-CUUGUgGa-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.