miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 51444 1.11 0.000721
Target:  5'- cGAGGCGCAUCACCGUGAACACCUCGCc -3'
miRNA:   3'- -CUCCGCGUAGUGGCACUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 25324 0.78 0.148713
Target:  5'- cAGcGCGCGUCguacacagagaacGCCGUGAACGCC-CGCa -3'
miRNA:   3'- cUC-CGCGUAG-------------UGGCACUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 34519 0.76 0.223917
Target:  5'- -cGGUcgucGCGUCGCCGagGcGCACCUCGCa -3'
miRNA:   3'- cuCCG----CGUAGUGGCa-CuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 29647 0.74 0.26865
Target:  5'- -cGGCGCGaguaACCGgcugcucGAACGCCUCGCc -3'
miRNA:   3'- cuCCGCGUag--UGGCa------CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1277 0.74 0.275599
Target:  5'- cGAGGUGU-UCACgGUGAuGCGCCUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGgCACU-UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 27311 0.74 0.289928
Target:  5'- aGAGcCGCGUCGCCGUGAuCGCCgCGa -3'
miRNA:   3'- -CUCcGCGUAGUGGCACUuGUGGaGCg -5'
12775 5' -55.1 NC_003387.1 + 13421 0.74 0.289928
Target:  5'- -cGGCGC-UCGCCGgugUGAACuACCUCGg -3'
miRNA:   3'- cuCCGCGuAGUGGC---ACUUG-UGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 20177 0.74 0.297308
Target:  5'- aGGGCGCGguugaugCGCUGcu-GCGCCUCGCa -3'
miRNA:   3'- cUCCGCGUa------GUGGCacuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8999 0.74 0.297308
Target:  5'- cGGGCucccGCAUgcCGCCGUcGAGCACCUgGCg -3'
miRNA:   3'- cUCCG----CGUA--GUGGCA-CUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 52235 0.73 0.304834
Target:  5'- cGGGcGCGCAUCGCgacGAGCAgCUCGCg -3'
miRNA:   3'- -CUC-CGCGUAGUGgcaCUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 30768 0.73 0.312504
Target:  5'- cGGGCGUG--ACCGUGuACugCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 42206 0.73 0.312504
Target:  5'- -cGGCccGCAUCGCCGagccGAGCGCCcCGCu -3'
miRNA:   3'- cuCCG--CGUAGUGGCa---CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 1321 0.73 0.328283
Target:  5'- cAGGCGCucgccgGUCACCGgccGAAUccgaaaucgGCCUCGCu -3'
miRNA:   3'- cUCCGCG------UAGUGGCa--CUUG---------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 26809 0.73 0.33639
Target:  5'- uGGGGCGCcguauUCGCCGUGuuuGGCAUCUUGg -3'
miRNA:   3'- -CUCCGCGu----AGUGGCAC---UUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 18106 0.73 0.33639
Target:  5'- cGAGGCGCAggaUUAUgCGUGGACGCCguaCGUc -3'
miRNA:   3'- -CUCCGCGU---AGUG-GCACUUGUGGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 19458 0.72 0.36158
Target:  5'- cGGGCGCguGUCAgUGUGGGCGCCgaggccacCGCg -3'
miRNA:   3'- cUCCGCG--UAGUgGCACUUGUGGa-------GCG- -5'
12775 5' -55.1 NC_003387.1 + 4667 0.72 0.370263
Target:  5'- cGGGGCGCGguaGCgGgUGAACugCUUGCc -3'
miRNA:   3'- -CUCCGCGUag-UGgC-ACUUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 50243 0.72 0.379088
Target:  5'- cGAGGCGCcguacgucagCGCCGggcgGuGCACCUCGg -3'
miRNA:   3'- -CUCCGCGua--------GUGGCa---CuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 33654 0.72 0.379088
Target:  5'- cAGG-GCAUCACCGUG-GC-CCUgGCg -3'
miRNA:   3'- cUCCgCGUAGUGGCACuUGuGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 23832 0.71 0.397155
Target:  5'- aGGGCGCcgCGCCGgGAcucgGCGCCgugcCGCu -3'
miRNA:   3'- cUCCGCGuaGUGGCaCU----UGUGGa---GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.