miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 37537 0.71 0.415767
Target:  5'- cGGGCGCGggccUCcUCGUcGAuCACCUCGCg -3'
miRNA:   3'- cUCCGCGU----AGuGGCA-CUuGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7797 0.71 0.415767
Target:  5'- cGAGGUGCAg-GCCGagcUGcAACGCCUgGCg -3'
miRNA:   3'- -CUCCGCGUagUGGC---AC-UUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 1163 0.71 0.425271
Target:  5'- cGAGGCGCAgauccUCACCGaGAACGCgaUGg -3'
miRNA:   3'- -CUCCGCGU-----AGUGGCaCUUGUGgaGCg -5'
12775 5' -55.1 NC_003387.1 + 19506 0.71 0.434903
Target:  5'- -cGGC-CAUCGCCGaGcGgGCCUCGCg -3'
miRNA:   3'- cuCCGcGUAGUGGCaCuUgUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 2467 0.7 0.44466
Target:  5'- cGAGGUGCAcCGCCcggcgcUGAcguacgGCGCCUCGUa -3'
miRNA:   3'- -CUCCGCGUaGUGGc-----ACU------UGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 46002 0.7 0.454539
Target:  5'- cGGGGCGaGUCgACgGUGAACugCcCGCg -3'
miRNA:   3'- -CUCCGCgUAG-UGgCACUUGugGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 48678 0.7 0.454539
Target:  5'- cGAGGCGUAUCgcacccACCGcacGC-CCUCGCg -3'
miRNA:   3'- -CUCCGCGUAG------UGGCacuUGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1617 0.7 0.474646
Target:  5'- cGGGCGCG----UGUGGGCAgCCUCGCg -3'
miRNA:   3'- cUCCGCGUagugGCACUUGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8612 0.7 0.484864
Target:  5'- uGGGGCGaCGUUACCaagGUGuucGCGgCCUCGCc -3'
miRNA:   3'- -CUCCGC-GUAGUGG---CACu--UGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7346 0.7 0.495187
Target:  5'- cGGGCGCAgcuaacCGCCGgcaaaaacucGAGCGCgUCGCc -3'
miRNA:   3'- cUCCGCGUa-----GUGGCa---------CUUGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 32049 0.7 0.495187
Target:  5'- cGGGuCGCAagucugUCGCCGccGAGCGCCcguUCGCg -3'
miRNA:   3'- cUCC-GCGU------AGUGGCa-CUUGUGG---AGCG- -5'
12775 5' -55.1 NC_003387.1 + 25209 0.69 0.505608
Target:  5'- --aGCGCAUCAUgGUGcugacguuuagcGGCACCUCGg -3'
miRNA:   3'- cucCGCGUAGUGgCAC------------UUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44281 0.69 0.505608
Target:  5'- --cGCGCGguggcUCGCCGUGucucucgauUACCUCGCg -3'
miRNA:   3'- cucCGCGU-----AGUGGCACuu-------GUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 21829 0.69 0.516122
Target:  5'- uGGGaGCGCAagCGCagcguGUGGACACCggCGCa -3'
miRNA:   3'- -CUC-CGCGUa-GUGg----CACUUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 14044 0.69 0.516122
Target:  5'- -cGGCGCAcccgcacuuUCAgCGgaUGGGCGCCUgGCa -3'
miRNA:   3'- cuCCGCGU---------AGUgGC--ACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 21748 0.69 0.52566
Target:  5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3'
miRNA:   3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 43786 0.69 0.526724
Target:  5'- cGGGCGCcgugCAUCGcGGugGCCUCGg -3'
miRNA:   3'- cUCCGCGua--GUGGCaCUugUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 13337 0.69 0.526724
Target:  5'- cAGGCGCAcgagCACCucguACACCUCGg -3'
miRNA:   3'- cUCCGCGUa---GUGGcacuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 48410 0.69 0.534193
Target:  5'- -cGGCGUugagccacugccggGUCGCgGUGcGCugCUCGCc -3'
miRNA:   3'- cuCCGCG--------------UAGUGgCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14692 0.69 0.536334
Target:  5'- cGGGGCGcCGUCGCCGcGAuccguugcggugcACGgCUUGCu -3'
miRNA:   3'- -CUCCGC-GUAGUGGCaCU-------------UGUgGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.