miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 50557 0.69 0.548161
Target:  5'- gGGGGCGC-UUugUGUuGACACCUCa- -3'
miRNA:   3'- -CUCCGCGuAGugGCAcUUGUGGAGcg -5'
12775 5' -55.1 NC_003387.1 + 51728 0.69 0.537405
Target:  5'- --aGCGCAUCcgaccCCGgucGAGCGCCUCGg -3'
miRNA:   3'- cucCGCGUAGu----GGCa--CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 1163 0.71 0.425271
Target:  5'- cGAGGCGCAgauccUCACCGaGAACGCgaUGg -3'
miRNA:   3'- -CUCCGCGU-----AGUGGCaCUUGUGgaGCg -5'
12775 5' -55.1 NC_003387.1 + 13421 0.74 0.289928
Target:  5'- -cGGCGC-UCGCCGgugUGAACuACCUCGg -3'
miRNA:   3'- cuCCGCGuAGUGGC---ACUUG-UGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 51426 0.67 0.620448
Target:  5'- -cGGCGCcgccucgaacugCGCCGgucGAACGCCgCGCa -3'
miRNA:   3'- cuCCGCGua----------GUGGCa--CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 38072 0.68 0.585183
Target:  5'- cGAGcGcCGCGUCACUGUGcgcggcggccugacgGGCACCU-GCg -3'
miRNA:   3'- -CUC-C-GCGUAGUGGCAC---------------UUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 14044 0.69 0.516122
Target:  5'- -cGGCGCAcccgcacuuUCAgCGgaUGGGCGCCUgGCa -3'
miRNA:   3'- cuCCGCGU---------AGUgGC--ACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 27311 0.74 0.289928
Target:  5'- aGAGcCGCGUCGCCGUGAuCGCCgCGa -3'
miRNA:   3'- -CUCcGCGUAGUGGCACUuGUGGaGCg -5'
12775 5' -55.1 NC_003387.1 + 49093 0.68 0.580797
Target:  5'- cAGGCGUA-CGaaGUcGAGCACCUCGa -3'
miRNA:   3'- cUCCGCGUaGUggCA-CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 1277 0.74 0.275599
Target:  5'- cGAGGUGU-UCACgGUGAuGCGCCUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGgCACU-UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 21748 0.69 0.52566
Target:  5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3'
miRNA:   3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 36087 0.69 0.548161
Target:  5'- cGAGGCGCA-CGCCGagugcaUGAGCAUgUC-Cg -3'
miRNA:   3'- -CUCCGCGUaGUGGC------ACUUGUGgAGcG- -5'
12775 5' -55.1 NC_003387.1 + 32049 0.7 0.495187
Target:  5'- cGGGuCGCAagucugUCGCCGccGAGCGCCcguUCGCg -3'
miRNA:   3'- cUCC-GCGU------AGUGGCa-CUUGUGG---AGCG- -5'
12775 5' -55.1 NC_003387.1 + 2467 0.7 0.44466
Target:  5'- cGAGGUGCAcCGCCcggcgcUGAcguacgGCGCCUCGUa -3'
miRNA:   3'- -CUCCGCGUaGUGGc-----ACU------UGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 19458 0.72 0.36158
Target:  5'- cGGGCGCguGUCAgUGUGGGCGCCgaggccacCGCg -3'
miRNA:   3'- cUCCGCG--UAGUgGCACUUGUGGa-------GCG- -5'
12775 5' -55.1 NC_003387.1 + 30768 0.73 0.312504
Target:  5'- cGGGCGUG--ACCGUGuACugCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 3631 0.67 0.658023
Target:  5'- cGGGCGUgcggguAUCGCCGUcGAcCGgCUCGUg -3'
miRNA:   3'- cUCCGCG------UAGUGGCA-CUuGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 34604 0.67 0.62487
Target:  5'- cGAGGCgGCAuUCACCGgcaUGGcCGCCUaccugCGCa -3'
miRNA:   3'- -CUCCG-CGU-AGUGGC---ACUuGUGGA-----GCG- -5'
12775 5' -55.1 NC_003387.1 + 24210 0.68 0.613818
Target:  5'- -cGGCGCAccgCACCGgacGAAUugGCCUgaCGCg -3'
miRNA:   3'- cuCCGCGUa--GUGGCa--CUUG--UGGA--GCG- -5'
12775 5' -55.1 NC_003387.1 + 43691 0.68 0.591773
Target:  5'- -uGGCGUggAUCGCCGacGGCGCC-CGCc -3'
miRNA:   3'- cuCCGCG--UAGUGGCacUUGUGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.