miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 49968 0.66 0.690956
Target:  5'- -cGGgGCGUUugUGUuGACACCUCa- -3'
miRNA:   3'- cuCCgCGUAGugGCAcUUGUGGAGcg -5'
12775 5' -55.1 NC_003387.1 + 48778 0.66 0.690956
Target:  5'- -cGGCGCAgccagcUCGCCGcUGAuCGCCgcgGCg -3'
miRNA:   3'- cuCCGCGU------AGUGGC-ACUuGUGGag-CG- -5'
12775 5' -55.1 NC_003387.1 + 6861 0.66 0.690956
Target:  5'- -cGGCGCGcaGCCGc-AGCAgCUCGCg -3'
miRNA:   3'- cuCCGCGUagUGGCacUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 18721 0.66 0.680021
Target:  5'- aGGGCGCggCACuCGUcGAGCAgCgggcagCGCa -3'
miRNA:   3'- cUCCGCGuaGUG-GCA-CUUGUgGa-----GCG- -5'
12775 5' -55.1 NC_003387.1 + 25912 0.66 0.680021
Target:  5'- -cGGCGCGcUCACCGac--CACCagCGCg -3'
miRNA:   3'- cuCCGCGU-AGUGGCacuuGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 26850 0.66 0.680021
Target:  5'- -cGGCGa---GCUGUGGauGCACCUCGg -3'
miRNA:   3'- cuCCGCguagUGGCACU--UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 25481 0.66 0.680021
Target:  5'- -cGGCGCAUC-CUGUcGGGCgACCU-GCa -3'
miRNA:   3'- cuCCGCGUAGuGGCA-CUUG-UGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 8249 0.67 0.669039
Target:  5'- -cGGUcaccCGUCACgcgggCGUGcAGCGCCUCGCg -3'
miRNA:   3'- cuCCGc---GUAGUG-----GCAC-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 52029 0.67 0.669039
Target:  5'- -cGGCGCAaugaCGUGGcgcGCgACCUCGCu -3'
miRNA:   3'- cuCCGCGUagugGCACU---UG-UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7473 0.67 0.669039
Target:  5'- cAGGCG-AUCACCGagccGcGCACC-CGCa -3'
miRNA:   3'- cUCCGCgUAGUGGCa---CuUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 3631 0.67 0.658023
Target:  5'- cGGGCGUgcggguAUCGCCGUcGAcCGgCUCGUg -3'
miRNA:   3'- cUCCGCG------UAGUGGCA-CUuGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 28562 0.67 0.658023
Target:  5'- cGAGGCgGCgAUCGCCGUcGAcgACGcCCUCa- -3'
miRNA:   3'- -CUCCG-CG-UAGUGGCA-CU--UGU-GGAGcg -5'
12775 5' -55.1 NC_003387.1 + 41406 0.67 0.65692
Target:  5'- cGAGGCGCAgcacgagUCGCUGUucGAGCuacccgaggucACCggCGCg -3'
miRNA:   3'- -CUCCGCGU-------AGUGGCA--CUUG-----------UGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 8713 0.67 0.646982
Target:  5'- uGAGGUGCuGUCACCGU---UugCUgGCa -3'
miRNA:   3'- -CUCCGCG-UAGUGGCAcuuGugGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 14872 0.67 0.646982
Target:  5'- cGAGGCGagcCGCCGggcgcagGggUgcccgACCUCGCu -3'
miRNA:   3'- -CUCCGCguaGUGGCa------CuuG-----UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10510 0.67 0.635927
Target:  5'- -cGGUGCgccgGUCGCCGUc--CugCUCGCg -3'
miRNA:   3'- cuCCGCG----UAGUGGCAcuuGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 28118 0.67 0.635927
Target:  5'- uGAGGCGCugAUCGCCG---AgGCC-CGCa -3'
miRNA:   3'- -CUCCGCG--UAGUGGCacuUgUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 2348 0.67 0.62487
Target:  5'- cGAGGcCGcCGUCGgCGUcGAGCGCCaCGUa -3'
miRNA:   3'- -CUCC-GC-GUAGUgGCA-CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 23019 0.67 0.62487
Target:  5'- uGGGCGC--CGCC--GAGCGCCUCGa -3'
miRNA:   3'- cUCCGCGuaGUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 34604 0.67 0.62487
Target:  5'- cGAGGCgGCAuUCACCGgcaUGGcCGCCUaccugCGCa -3'
miRNA:   3'- -CUCCG-CGU-AGUGGC---ACUuGUGGA-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.