miRNA display CGI


Results 41 - 60 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 51426 0.67 0.620448
Target:  5'- -cGGCGCcgccucgaacugCGCCGgucGAACGCCgCGCa -3'
miRNA:   3'- cuCCGCGua----------GUGGCa--CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 41086 0.68 0.613818
Target:  5'- cGAGGgGCgAUCgugaGCCGcGAGCugCUgGCg -3'
miRNA:   3'- -CUCCgCG-UAG----UGGCaCUUGugGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 16714 0.68 0.613818
Target:  5'- -cGGCGCAccacgaccUCGCCGUcGAucguGC-CCUCGUc -3'
miRNA:   3'- cuCCGCGU--------AGUGGCA-CU----UGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 24210 0.68 0.613818
Target:  5'- -cGGCGCAccgCACCGgacGAAUugGCCUgaCGCg -3'
miRNA:   3'- cuCCGCGUa--GUGGCa--CUUG--UGGA--GCG- -5'
12775 5' -55.1 NC_003387.1 + 11958 0.68 0.613818
Target:  5'- cGAGGCGCAccUCGgUGUaucGACGCC-CGCc -3'
miRNA:   3'- -CUCCGCGU--AGUgGCAc--UUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 20191 0.68 0.613818
Target:  5'- -cGGCGC--CGCCGUGAacuACGCaugCGCu -3'
miRNA:   3'- cuCCGCGuaGUGGCACU---UGUGga-GCG- -5'
12775 5' -55.1 NC_003387.1 + 7847 0.68 0.613818
Target:  5'- -cGGCuGCGUCAgcUCGgccAGCACCUUGCg -3'
miRNA:   3'- cuCCG-CGUAGU--GGCac-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 11468 0.68 0.602783
Target:  5'- cGGGGCGCucaaguucAUgGCCGacAAUGCCUCGUg -3'
miRNA:   3'- -CUCCGCG--------UAgUGGCacUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48288 0.68 0.602783
Target:  5'- -cGGCGCGg-GCuCGgcGAACGCCUUGCc -3'
miRNA:   3'- cuCCGCGUagUG-GCa-CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 9612 0.68 0.602783
Target:  5'- -cGGCGCcgCGCCGU---CGCgCUCGUa -3'
miRNA:   3'- cuCCGCGuaGUGGCAcuuGUG-GAGCG- -5'
12775 5' -55.1 NC_003387.1 + 38915 0.68 0.602783
Target:  5'- cGGGCGUuugcUCGCUGUGGAuCugCgagCGCa -3'
miRNA:   3'- cUCCGCGu---AGUGGCACUU-GugGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 6211 0.68 0.602783
Target:  5'- -uGGUGCAgUCGCCGagcgagcugcgGAACACCugaacUCGCa -3'
miRNA:   3'- cuCCGCGU-AGUGGCa----------CUUGUGG-----AGCG- -5'
12775 5' -55.1 NC_003387.1 + 36162 0.68 0.602783
Target:  5'- cGuuGCGCAccugCACCuUGAACGCCUgGUa -3'
miRNA:   3'- -CucCGCGUa---GUGGcACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 35852 0.68 0.60168
Target:  5'- --cGUGCAUCGCC-UGGGCGugcggcgccaucuCCUCGCg -3'
miRNA:   3'- cucCGCGUAGUGGcACUUGU-------------GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 37162 0.68 0.60168
Target:  5'- cGGGCGCAuggUCACCGagcUGGcggcccgGCACCccgagCGCg -3'
miRNA:   3'- cUCCGCGU---AGUGGC---ACU-------UGUGGa----GCG- -5'
12775 5' -55.1 NC_003387.1 + 43691 0.68 0.591773
Target:  5'- -uGGCGUggAUCGCCGacGGCGCC-CGCc -3'
miRNA:   3'- cuCCGCG--UAGUGGCacUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 38072 0.68 0.585183
Target:  5'- cGAGcGcCGCGUCACUGUGcgcggcggccugacgGGCACCU-GCg -3'
miRNA:   3'- -CUC-C-GCGUAGUGGCAC---------------UUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 49093 0.68 0.580797
Target:  5'- cAGGCGUA-CGaaGUcGAGCACCUCGa -3'
miRNA:   3'- cUCCGCGUaGUggCA-CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 5184 0.68 0.580797
Target:  5'- cGGGGCaggGCAUCaaggcccgGCUGUG-GCGCCUCGg -3'
miRNA:   3'- -CUCCG---CGUAG--------UGGCACuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44421 0.68 0.580797
Target:  5'- uGAuGCGCcgCGCCgGUGAuccACACgUCGCc -3'
miRNA:   3'- -CUcCGCGuaGUGG-CACU---UGUGgAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.