miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 52235 0.73 0.304834
Target:  5'- cGGGcGCGCAUCGCgacGAGCAgCUCGCg -3'
miRNA:   3'- -CUC-CGCGUAGUGgcaCUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 52029 0.67 0.669039
Target:  5'- -cGGCGCAaugaCGUGGcgcGCgACCUCGCu -3'
miRNA:   3'- cuCCGCGUagugGCACU---UG-UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 51925 0.66 0.701835
Target:  5'- -uGGcCGaCAUCAUCGUGAccCGgCUCGCu -3'
miRNA:   3'- cuCC-GC-GUAGUGGCACUu-GUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 51728 0.69 0.537405
Target:  5'- --aGCGCAUCcgaccCCGgucGAGCGCCUCGg -3'
miRNA:   3'- cucCGCGUAGu----GGCa--CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 51592 0.66 0.723374
Target:  5'- cAGGCGCcgagcaCACCGUGcGCccuaGCgUCGCu -3'
miRNA:   3'- cUCCGCGua----GUGGCACuUG----UGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 51444 1.11 0.000721
Target:  5'- cGAGGCGCAUCACCGUGAACACCUCGCc -3'
miRNA:   3'- -CUCCGCGUAGUGGCACUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 51426 0.67 0.620448
Target:  5'- -cGGCGCcgccucgaacugCGCCGgucGAACGCCgCGCa -3'
miRNA:   3'- cuCCGCGua----------GUGGCa--CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 50557 0.69 0.548161
Target:  5'- gGGGGCGC-UUugUGUuGACACCUCa- -3'
miRNA:   3'- -CUCCGCGuAGugGCAcUUGUGGAGcg -5'
12775 5' -55.1 NC_003387.1 + 50243 0.72 0.379088
Target:  5'- cGAGGCGCcguacgucagCGCCGggcgGuGCACCUCGg -3'
miRNA:   3'- -CUCCGCGua--------GUGGCa---CuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 50020 0.66 0.723374
Target:  5'- ---cCGCGUCGCCGaGcACaACCUCGCc -3'
miRNA:   3'- cuccGCGUAGUGGCaCuUG-UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 49968 0.66 0.690956
Target:  5'- -cGGgGCGUUugUGUuGACACCUCa- -3'
miRNA:   3'- cuCCgCGUAGugGCAcUUGUGGAGcg -5'
12775 5' -55.1 NC_003387.1 + 49574 0.66 0.701835
Target:  5'- cGAGGUGCGcccgCuGCCGggcGGugGCCUgGCa -3'
miRNA:   3'- -CUCCGCGUa---G-UGGCa--CUugUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 49093 0.68 0.580797
Target:  5'- cAGGCGUA-CGaaGUcGAGCACCUCGa -3'
miRNA:   3'- cUCCGCGUaGUggCA-CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 49064 0.66 0.734012
Target:  5'- -uGGCGC-UCACCG-GGcaGgCUCGCg -3'
miRNA:   3'- cuCCGCGuAGUGGCaCUugUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48778 0.66 0.690956
Target:  5'- -cGGCGCAgccagcUCGCCGcUGAuCGCCgcgGCg -3'
miRNA:   3'- cuCCGCGU------AGUGGC-ACUuGUGGag-CG- -5'
12775 5' -55.1 NC_003387.1 + 48678 0.7 0.454539
Target:  5'- cGAGGCGUAUCgcacccACCGcacGC-CCUCGCg -3'
miRNA:   3'- -CUCCGCGUAG------UGGCacuUGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48410 0.69 0.534193
Target:  5'- -cGGCGUugagccacugccggGUCGCgGUGcGCugCUCGCc -3'
miRNA:   3'- cuCCGCG--------------UAGUGgCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48288 0.68 0.602783
Target:  5'- -cGGCGCGg-GCuCGgcGAACGCCUUGCc -3'
miRNA:   3'- cuCCGCGUagUG-GCa-CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 46002 0.7 0.454539
Target:  5'- cGGGGCGaGUCgACgGUGAACugCcCGCg -3'
miRNA:   3'- -CUCCGCgUAG-UGgCACUUGugGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 45144 0.66 0.722305
Target:  5'- cGAGGCGCggCGCucggagguggucgCGUGAgcagGCACCg-GCa -3'
miRNA:   3'- -CUCCGCGuaGUG-------------GCACU----UGUGGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.