miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 49093 0.68 0.580797
Target:  5'- cAGGCGUA-CGaaGUcGAGCACCUCGa -3'
miRNA:   3'- cUCCGCGUaGUggCA-CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 2467 0.7 0.44466
Target:  5'- cGAGGUGCAcCGCCcggcgcUGAcguacgGCGCCUCGUa -3'
miRNA:   3'- -CUCCGCGUaGUGGc-----ACU------UGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 25481 0.66 0.680021
Target:  5'- -cGGCGCAUC-CUGUcGGGCgACCU-GCa -3'
miRNA:   3'- cuCCGCGUAGuGGCA-CUUG-UGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 1163 0.71 0.425271
Target:  5'- cGAGGCGCAgauccUCACCGaGAACGCgaUGg -3'
miRNA:   3'- -CUCCGCGU-----AGUGGCaCUUGUGgaGCg -5'
12775 5' -55.1 NC_003387.1 + 22965 0.66 0.735071
Target:  5'- uGGGGCGCcccgGUCAUCGUGucgggcGGCGCCgacgacggcaaggccCGCa -3'
miRNA:   3'- -CUCCGCG----UAGUGGCAC------UUGUGGa--------------GCG- -5'
12775 5' -55.1 NC_003387.1 + 8612 0.7 0.484864
Target:  5'- uGGGGCGaCGUUACCaagGUGuucGCGgCCUCGCc -3'
miRNA:   3'- -CUCCGC-GUAGUGG---CACu--UGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 44281 0.69 0.505608
Target:  5'- --cGCGCGguggcUCGCCGUGucucucgauUACCUCGCg -3'
miRNA:   3'- cucCGCGU-----AGUGGCACuu-------GUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 45144 0.66 0.722305
Target:  5'- cGAGGCGCggCGCucggagguggucgCGUGAgcagGCACCg-GCa -3'
miRNA:   3'- -CUCCGCGuaGUG-------------GCACU----UGUGGagCG- -5'
12775 5' -55.1 NC_003387.1 + 40760 0.66 0.701835
Target:  5'- cGGGCGUcgaGUaCACCGagGuGCGCCUCGa -3'
miRNA:   3'- cUCCGCG---UA-GUGGCa-CuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 51925 0.66 0.701835
Target:  5'- -uGGcCGaCAUCAUCGUGAccCGgCUCGCu -3'
miRNA:   3'- cuCC-GC-GUAGUGGCACUu-GUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 15564 0.66 0.690956
Target:  5'- gGAGGUGCA--GCCGauucGCGCCUgGCu -3'
miRNA:   3'- -CUCCGCGUagUGGCacu-UGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 32192 0.66 0.734012
Target:  5'- cGAGcuGCGCgucGUCACCGacGAGCGCgaCGCc -3'
miRNA:   3'- -CUC--CGCG---UAGUGGCa-CUUGUGgaGCG- -5'
12775 5' -55.1 NC_003387.1 + 3631 0.67 0.658023
Target:  5'- cGGGCGUgcggguAUCGCCGUcGAcCGgCUCGUg -3'
miRNA:   3'- cUCCGCG------UAGUGGCA-CUuGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 34604 0.67 0.62487
Target:  5'- cGAGGCgGCAuUCACCGgcaUGGcCGCCUaccugCGCa -3'
miRNA:   3'- -CUCCG-CGU-AGUGGC---ACUuGUGGA-----GCG- -5'
12775 5' -55.1 NC_003387.1 + 24210 0.68 0.613818
Target:  5'- -cGGCGCAccgCACCGgacGAAUugGCCUgaCGCg -3'
miRNA:   3'- cuCCGCGUa--GUGGCa--CUUG--UGGA--GCG- -5'
12775 5' -55.1 NC_003387.1 + 43691 0.68 0.591773
Target:  5'- -uGGCGUggAUCGCCGacGGCGCC-CGCc -3'
miRNA:   3'- cuCCGCG--UAGUGGCacUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 36087 0.69 0.548161
Target:  5'- cGAGGCGCA-CGCCGagugcaUGAGCAUgUC-Cg -3'
miRNA:   3'- -CUCCGCGUaGUGGC------ACUUGUGgAGcG- -5'
12775 5' -55.1 NC_003387.1 + 42011 0.69 0.537405
Target:  5'- uGGGGcCGCcUgGCCGUGAugguCGCCgagCGCc -3'
miRNA:   3'- -CUCC-GCGuAgUGGCACUu---GUGGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 49064 0.66 0.734012
Target:  5'- -uGGCGC-UCACCG-GGcaGgCUCGCg -3'
miRNA:   3'- cuCCGCGuAGUGGCaCUugUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 4525 0.69 0.548161
Target:  5'- -cGGcCGCcgcCGCCGgugcGGGCACCUUGCg -3'
miRNA:   3'- cuCC-GCGua-GUGGCa---CUUGUGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.