miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 3' -56.4 NC_003387.1 + 9798 0.66 0.630124
Target:  5'- cAUGUUGUCGAgcgacCGGCGCUGcaGGcUGCGc -3'
miRNA:   3'- -UACGACAGCUa----GUCGUGGC--CCuACGC- -5'
12776 3' -56.4 NC_003387.1 + 27534 0.66 0.630124
Target:  5'- -cGCUGccgCGGcggCGGCGCCGGGGccaccGCGc -3'
miRNA:   3'- uaCGACa--GCUa--GUCGUGGCCCUa----CGC- -5'
12776 3' -56.4 NC_003387.1 + 21000 0.66 0.619045
Target:  5'- -aGCUcucGUCGGcgaCAGCGCCGGGcUGUc -3'
miRNA:   3'- uaCGA---CAGCUa--GUCGUGGCCCuACGc -5'
12776 3' -56.4 NC_003387.1 + 43305 0.66 0.619045
Target:  5'- gGUGCUGggcgacuacgCGAUCacAGCGCCGGGcaauuuccUGCu -3'
miRNA:   3'- -UACGACa---------GCUAG--UCGUGGCCCu-------ACGc -5'
12776 3' -56.4 NC_003387.1 + 44025 0.66 0.606871
Target:  5'- -gGCUcgucgacGUCGGUCGGCAgCGGcGUGCc -3'
miRNA:   3'- uaCGA-------CAGCUAGUCGUgGCCcUACGc -5'
12776 3' -56.4 NC_003387.1 + 24652 0.66 0.59693
Target:  5'- cUGCUGcgCGAggucgcCAGCGCCGaGGGUGa- -3'
miRNA:   3'- uACGACa-GCUa-----GUCGUGGC-CCUACgc -5'
12776 3' -56.4 NC_003387.1 + 23364 0.66 0.59693
Target:  5'- -cGCUGaCGGUCAGguCGCCGaGGAUGa- -3'
miRNA:   3'- uaCGACaGCUAGUC--GUGGC-CCUACgc -5'
12776 3' -56.4 NC_003387.1 + 24924 0.66 0.585914
Target:  5'- ----cGUCGggCAcCGCCGGGGUGCu -3'
miRNA:   3'- uacgaCAGCuaGUcGUGGCCCUACGc -5'
12776 3' -56.4 NC_003387.1 + 33677 0.66 0.584814
Target:  5'- -gGCgaugGUCGAccucgacUCGGCgACCGGcGGUGUGa -3'
miRNA:   3'- uaCGa---CAGCU-------AGUCG-UGGCC-CUACGC- -5'
12776 3' -56.4 NC_003387.1 + 14328 0.66 0.581518
Target:  5'- -gGUUGUCGAggucgaggucgugCAGCACCaGGAUGa- -3'
miRNA:   3'- uaCGACAGCUa------------GUCGUGGcCCUACgc -5'
12776 3' -56.4 NC_003387.1 + 18882 0.67 0.579323
Target:  5'- -aGCUcgggGUCGAUCAGgcucgggaucuugccCAgCGGGAUGCc -3'
miRNA:   3'- uaCGA----CAGCUAGUC---------------GUgGCCCUACGc -5'
12776 3' -56.4 NC_003387.1 + 31349 0.67 0.574937
Target:  5'- -cGCggGUCGAaCAGCACCGGccaggGCa -3'
miRNA:   3'- uaCGa-CAGCUaGUCGUGGCCcua--CGc -5'
12776 3' -56.4 NC_003387.1 + 46593 0.67 0.564008
Target:  5'- -gGCaggGUCGc-CAGCACCGGcaGGUGCGu -3'
miRNA:   3'- uaCGa--CAGCuaGUCGUGGCC--CUACGC- -5'
12776 3' -56.4 NC_003387.1 + 46451 0.67 0.564008
Target:  5'- -cGCgucGUCGAugacguucUCGuGCACCGGGAUGa- -3'
miRNA:   3'- uaCGa--CAGCU--------AGU-CGUGGCCCUACgc -5'
12776 3' -56.4 NC_003387.1 + 65 0.67 0.520923
Target:  5'- -cGCgcUCGAUCGGCGCCGcGGGcguuUGCu -3'
miRNA:   3'- uaCGacAGCUAGUCGUGGC-CCU----ACGc -5'
12776 3' -56.4 NC_003387.1 + 36369 0.67 0.520923
Target:  5'- -gGUUGUCcaagcccUCGGCGCCGGGuUGCu -3'
miRNA:   3'- uaCGACAGcu-----AGUCGUGGCCCuACGc -5'
12776 3' -56.4 NC_003387.1 + 21595 0.67 0.519861
Target:  5'- gAUGUUcUCGggCGGCGCCcaccuggcgcucgGGGGUGCGu -3'
miRNA:   3'- -UACGAcAGCuaGUCGUGG-------------CCCUACGC- -5'
12776 3' -56.4 NC_003387.1 + 49351 0.68 0.458933
Target:  5'- -aGC-GUCGGguaCAGCACCGuGGUGCGc -3'
miRNA:   3'- uaCGaCAGCUa--GUCGUGGCcCUACGC- -5'
12776 3' -56.4 NC_003387.1 + 50248 0.69 0.439148
Target:  5'- -cGCcGUaCG-UCAGCGCCGGGcgGUGc -3'
miRNA:   3'- uaCGaCA-GCuAGUCGUGGCCCuaCGC- -5'
12776 3' -56.4 NC_003387.1 + 11404 0.69 0.439148
Target:  5'- -cGCUGgccgCGAUCGGCcCCGaGGUGCu -3'
miRNA:   3'- uaCGACa---GCUAGUCGuGGCcCUACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.