miRNA display CGI


Results 41 - 60 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 6018 0.67 0.558747
Target:  5'- gCCUGCUUGGCG-UCCAG-CGGCaCGa- -3'
miRNA:   3'- -GGGCGAGUCGCuAGGUCaGCUG-GCgg -5'
12776 5' -58 NC_003387.1 + 12391 0.67 0.558747
Target:  5'- gCCGCUgcugcaGGCGAucaacUCCGGUgCG-CCGCUg -3'
miRNA:   3'- gGGCGAg-----UCGCU-----AGGUCA-GCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 3122 0.67 0.558747
Target:  5'- gCCGC-CAGCGGcagcacugCCAGgCcACCGCCc -3'
miRNA:   3'- gGGCGaGUCGCUa-------GGUCaGcUGGCGG- -5'
12776 5' -58 NC_003387.1 + 20097 0.67 0.548297
Target:  5'- aCCGCUCuGUGAUcgCCAGguacacCGACgGCa -3'
miRNA:   3'- gGGCGAGuCGCUA--GGUCa-----GCUGgCGg -5'
12776 5' -58 NC_003387.1 + 6407 0.67 0.548297
Target:  5'- cCCCGCUugcccuuccCAGCGGcCCGcugCG-CCGCCu -3'
miRNA:   3'- -GGGCGA---------GUCGCUaGGUca-GCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 9066 0.67 0.548297
Target:  5'- gCCCucCUCGGCGA-CUAGcUgGugCGCCa -3'
miRNA:   3'- -GGGc-GAGUCGCUaGGUC-AgCugGCGG- -5'
12776 5' -58 NC_003387.1 + 12270 0.67 0.548297
Target:  5'- uCCCGCgccUGGCGA-CCGG-CGGCCGg- -3'
miRNA:   3'- -GGGCGa--GUCGCUaGGUCaGCUGGCgg -5'
12776 5' -58 NC_003387.1 + 27938 0.67 0.548297
Target:  5'- gCCGCgacccgAGCGGuUCCGGcucguggcgaUCGACCGCg -3'
miRNA:   3'- gGGCGag----UCGCU-AGGUC----------AGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 14904 0.67 0.548297
Target:  5'- cCUCGCUCGGCccGAUCgCGcgcugcugCGACCGCg -3'
miRNA:   3'- -GGGCGAGUCG--CUAG-GUca------GCUGGCGg -5'
12776 5' -58 NC_003387.1 + 8805 0.67 0.548297
Target:  5'- uCCCGCUCAGCucGcgCCcGaacUUGGCCGUa -3'
miRNA:   3'- -GGGCGAGUCG--CuaGGuC---AGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 14670 0.67 0.548297
Target:  5'- gCUCGCUCAGCcaccgcccGAUCgGGgCG-CCGUCg -3'
miRNA:   3'- -GGGCGAGUCG--------CUAGgUCaGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 11592 0.67 0.53791
Target:  5'- gCCG-UCGGCgcgcugccacuuGAUCCGGUCGugCagcGCCa -3'
miRNA:   3'- gGGCgAGUCG------------CUAGGUCAGCugG---CGG- -5'
12776 5' -58 NC_003387.1 + 21719 0.67 0.53791
Target:  5'- -aCGCUCGGCccGAUCCuGaccUCGGCC-CCa -3'
miRNA:   3'- ggGCGAGUCG--CUAGGuC---AGCUGGcGG- -5'
12776 5' -58 NC_003387.1 + 28015 0.67 0.53791
Target:  5'- aCgCGCUUGGCGAgCUuggcGUCGuACUGCCg -3'
miRNA:   3'- -GgGCGAGUCGCUaGGu---CAGC-UGGCGG- -5'
12776 5' -58 NC_003387.1 + 39592 0.67 0.53791
Target:  5'- gCUGCgcacCAGCGAggCCgacgAGUgGAUCGCCg -3'
miRNA:   3'- gGGCGa---GUCGCUa-GG----UCAgCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 34546 0.67 0.53791
Target:  5'- aCCCGCUCGaCGAcgUCguGUauAUCGCCg -3'
miRNA:   3'- -GGGCGAGUcGCU--AGguCAgcUGGCGG- -5'
12776 5' -58 NC_003387.1 + 39069 0.67 0.53791
Target:  5'- gCC-CUCGGCGA-CCgAGcCG-CCGCCg -3'
miRNA:   3'- gGGcGAGUCGCUaGG-UCaGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 1384 0.67 0.534807
Target:  5'- -gCGCUCAGCGggUCGGggucgcgcUCGaaguugugcgaggcGCCGCCg -3'
miRNA:   3'- ggGCGAGUCGCuaGGUC--------AGC--------------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 20401 0.67 0.53171
Target:  5'- gCCGC--AGCGGUCCAuGUCgGgcaucggguugugcaGCCGCCg -3'
miRNA:   3'- gGGCGagUCGCUAGGU-CAG-C---------------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 4449 0.67 0.527591
Target:  5'- gCCCGCgc--CGAaggCCgAGcCGACCGCCg -3'
miRNA:   3'- -GGGCGagucGCUa--GG-UCaGCUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.