miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 16318 0.66 0.601025
Target:  5'- --aGCUCGGCGccgguGUCgAuGUUGACCGCg -3'
miRNA:   3'- gggCGAGUCGC-----UAGgU-CAGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 41542 0.66 0.601025
Target:  5'- aCUCGCUCggcuacauggagGGCGAgcaCCuGUCGcuCUGCCa -3'
miRNA:   3'- -GGGCGAG------------UCGCUa--GGuCAGCu-GGCGG- -5'
12776 5' -58 NC_003387.1 + 9739 0.66 0.601025
Target:  5'- gUCUGCgCGGCGGUaaggcaAGUCGAggacgcgauCCGCCg -3'
miRNA:   3'- -GGGCGaGUCGCUAgg----UCAGCU---------GGCGG- -5'
12776 5' -58 NC_003387.1 + 43930 0.66 0.601025
Target:  5'- --aGCUgAGCGGgaaUCaGGUCGcCCGCCg -3'
miRNA:   3'- gggCGAgUCGCU---AGgUCAGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 3664 0.66 0.601025
Target:  5'- gCCUGCcCGGUGAgcgCCAGcagCGcaACCGUCg -3'
miRNA:   3'- -GGGCGaGUCGCUa--GGUCa--GC--UGGCGG- -5'
12776 5' -58 NC_003387.1 + 41963 0.66 0.590398
Target:  5'- gCCGC-CAGCGAggagcugcgCgCGGa-GGCCGCCg -3'
miRNA:   3'- gGGCGaGUCGCUa--------G-GUCagCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 39211 0.66 0.590398
Target:  5'- -aCGCugUCAGCGAcUCCAccggCGAacCCGCCg -3'
miRNA:   3'- ggGCG--AGUCGCU-AGGUca--GCU--GGCGG- -5'
12776 5' -58 NC_003387.1 + 42617 0.66 0.589338
Target:  5'- uCgCGCUCAGCGcgcauugCCAugaacuuGcCGACCGUCg -3'
miRNA:   3'- -GgGCGAGUCGCua-----GGU-------CaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 33980 0.66 0.589338
Target:  5'- gCUGCcgCAGCgGGUCgCGGUCGacgacgaGCUGCCu -3'
miRNA:   3'- gGGCGa-GUCG-CUAG-GUCAGC-------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 40248 0.66 0.588277
Target:  5'- uUCUGCUCGGacg-CCAGgcccgcggccaGGCCGCCg -3'
miRNA:   3'- -GGGCGAGUCgcuaGGUCag---------CUGGCGG- -5'
12776 5' -58 NC_003387.1 + 17009 0.66 0.579805
Target:  5'- gCUCGgUCAGCGGcaggCC-GUCG-UCGCCg -3'
miRNA:   3'- -GGGCgAGUCGCUa---GGuCAGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 39746 0.66 0.579805
Target:  5'- gCUCGUcgUCGGUGGccgcCCGGUaCGAgCCGCCa -3'
miRNA:   3'- -GGGCG--AGUCGCUa---GGUCA-GCU-GGCGG- -5'
12776 5' -58 NC_003387.1 + 41001 0.66 0.579805
Target:  5'- gCCUGaUCGGCGucgacggCCgGGUCGACUGCg -3'
miRNA:   3'- -GGGCgAGUCGCua-----GG-UCAGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 6698 0.66 0.578747
Target:  5'- -aCGCUCGGCGucuugcaCCGcgggcaguucaccGUCGACuCGCCc -3'
miRNA:   3'- ggGCGAGUCGCua-----GGU-------------CAGCUG-GCGG- -5'
12776 5' -58 NC_003387.1 + 21465 0.66 0.569252
Target:  5'- cCCCGCUggcgCAGCccGcgCCGGUCgGGCCGg- -3'
miRNA:   3'- -GGGCGA----GUCG--CuaGGUCAG-CUGGCgg -5'
12776 5' -58 NC_003387.1 + 23731 0.66 0.569252
Target:  5'- cUCgGCgcaGGCGAUCCagcGGUCGGgCGUCc -3'
miRNA:   3'- -GGgCGag-UCGCUAGG---UCAGCUgGCGG- -5'
12776 5' -58 NC_003387.1 + 31047 0.66 0.569252
Target:  5'- gCCaggGCgUCGGCGAacaCguGcUCGGCCGCCg -3'
miRNA:   3'- -GGg--CG-AGUCGCUa--GguC-AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 29711 0.66 0.569252
Target:  5'- -gCGCUCGGCGGcgcCCAGgccgaCGACgGCa -3'
miRNA:   3'- ggGCGAGUCGCUa--GGUCa----GCUGgCGg -5'
12776 5' -58 NC_003387.1 + 29373 0.66 0.566095
Target:  5'- aCCG-UCAGCGGcgCCGGugacgaccucgaucUCGcCCGCCg -3'
miRNA:   3'- gGGCgAGUCGCUa-GGUC--------------AGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 3122 0.67 0.558747
Target:  5'- gCCGC-CAGCGGcagcacugCCAGgCcACCGCCc -3'
miRNA:   3'- gGGCGaGUCGCUa-------GGUCaGcUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.