miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 714 0.69 0.402024
Target:  5'- gCCGCaaGGC-AUCguGUCGACgGCCu -3'
miRNA:   3'- gGGCGagUCGcUAGguCAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 3343 0.7 0.375824
Target:  5'- gCCCGCUCGuuuggcGCGGUC--GUCGACgGCa -3'
miRNA:   3'- -GGGCGAGU------CGCUAGguCAGCUGgCGg -5'
12776 5' -58 NC_003387.1 + 7500 0.71 0.326987
Target:  5'- aCCCGCUgGGUGA-CgAGUCuGCgGCCg -3'
miRNA:   3'- -GGGCGAgUCGCUaGgUCAGcUGgCGG- -5'
12776 5' -58 NC_003387.1 + 2019 0.75 0.183821
Target:  5'- cCCUGCUCGGUGccgCCGa-CGGCCGCCg -3'
miRNA:   3'- -GGGCGAGUCGCua-GGUcaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 19585 0.68 0.457749
Target:  5'- gCCUGCUCGGCG-UCgacguguggCAGUCGuuccuugacGCCGCg -3'
miRNA:   3'- -GGGCGAGUCGCuAG---------GUCAGC---------UGGCGg -5'
12776 5' -58 NC_003387.1 + 43971 0.69 0.438705
Target:  5'- gCCCGCaUGGCGAagcugacggUUCAcGUCGACCGgCu -3'
miRNA:   3'- -GGGCGaGUCGCU---------AGGU-CAGCUGGCgG- -5'
12776 5' -58 NC_003387.1 + 48773 0.7 0.375824
Target:  5'- -gUGCUCGGCGcagCCAGcUCG-CCGCUg -3'
miRNA:   3'- ggGCGAGUCGCua-GGUC-AGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 10519 0.75 0.183821
Target:  5'- cUCgGCUCGGCGAUgcgggCCGGguUCGGCCGUCu -3'
miRNA:   3'- -GGgCGAGUCGCUA-----GGUC--AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 48803 0.69 0.438705
Target:  5'- gCCGCggCGGCGG-CCA-UCGucCCGCCg -3'
miRNA:   3'- gGGCGa-GUCGCUaGGUcAGCu-GGCGG- -5'
12776 5' -58 NC_003387.1 + 15994 0.78 0.119851
Target:  5'- gCCGCacuGGCuGGUCCGGUaCGGCCGCCg -3'
miRNA:   3'- gGGCGag-UCG-CUAGGUCA-GCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 30033 0.7 0.375824
Target:  5'- gCCGC-CAGCGccgCC-GUCGAcaCCGCCc -3'
miRNA:   3'- gGGCGaGUCGCua-GGuCAGCU--GGCGG- -5'
12776 5' -58 NC_003387.1 + 28560 0.69 0.402024
Target:  5'- aCCGaggCGGCGAUCgCcGUCGACgaCGCCc -3'
miRNA:   3'- gGGCga-GUCGCUAG-GuCAGCUG--GCGG- -5'
12776 5' -58 NC_003387.1 + 33222 0.71 0.342729
Target:  5'- gCCCGCUCGGCGA------UGGCCGUCa -3'
miRNA:   3'- -GGGCGAGUCGCUaggucaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 48227 0.71 0.326987
Target:  5'- aCCCGCacgaUCGugucGCGc-CCGGUCGGCCGCg -3'
miRNA:   3'- -GGGCG----AGU----CGCuaGGUCAGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 51708 0.72 0.287193
Target:  5'- aCCCGCaaacgcaaggccgCAGCGcAUCCgaccccGGUCGAgCGCCu -3'
miRNA:   3'- -GGGCGa------------GUCGC-UAGG------UCAGCUgGCGG- -5'
12776 5' -58 NC_003387.1 + 11320 0.74 0.218645
Target:  5'- --aGCUCGGCGAgauugUCCAGUCGuucaaaaacauuggGCCGUCa -3'
miRNA:   3'- gggCGAGUCGCU-----AGGUCAGC--------------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 25970 0.68 0.497104
Target:  5'- aCCCGUUCGcCGAgguUCCGG-CGGCgGUCa -3'
miRNA:   3'- -GGGCGAGUcGCU---AGGUCaGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 17581 0.68 0.457749
Target:  5'- cCCCGCUgGuCGAccUgCAGU-GGCCGCCg -3'
miRNA:   3'- -GGGCGAgUcGCU--AgGUCAgCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 37293 0.68 0.448171
Target:  5'- gCgCGCUCGucggcGCGGUC--GUCGACCGCg -3'
miRNA:   3'- -GgGCGAGU-----CGCUAGguCAGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 13834 0.69 0.438705
Target:  5'- aCCCGCUCcacgguucGGCGcGUCUAGcuaaCGGCCGgCg -3'
miRNA:   3'- -GGGCGAG--------UCGC-UAGGUCa---GCUGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.