miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 21231 0.78 0.113491
Target:  5'- -gCGCagGGCGAUCCGGUCGGCauggugCGCCg -3'
miRNA:   3'- ggGCGagUCGCUAGGUCAGCUG------GCGG- -5'
12776 5' -58 NC_003387.1 + 48773 0.7 0.375824
Target:  5'- -gUGCUCGGCGcagCCAGcUCG-CCGCUg -3'
miRNA:   3'- ggGCGAGUCGCua-GGUC-AGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 3343 0.7 0.375824
Target:  5'- gCCCGCUCGuuuggcGCGGUC--GUCGACgGCa -3'
miRNA:   3'- -GGGCGAGU------CGCUAGguCAGCUGgCGg -5'
12776 5' -58 NC_003387.1 + 12857 0.66 0.622346
Target:  5'- aCCGCacCGGCGggCCuGUCuuuGCCGUCu -3'
miRNA:   3'- gGGCGa-GUCGCuaGGuCAGc--UGGCGG- -5'
12776 5' -58 NC_003387.1 + 11320 0.74 0.218645
Target:  5'- --aGCUCGGCGAgauugUCCAGUCGuucaaaaacauuggGCCGUCa -3'
miRNA:   3'- gggCGAGUCGCU-----AGGUCAGC--------------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 30487 0.72 0.276158
Target:  5'- uCCCG-UCGGCGccgGUCgAGUgGACCGUCg -3'
miRNA:   3'- -GGGCgAGUCGC---UAGgUCAgCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 51708 0.72 0.287193
Target:  5'- aCCCGCaaacgcaaggccgCAGCGcAUCCgaccccGGUCGAgCGCCu -3'
miRNA:   3'- -GGGCGa------------GUCGC-UAGG------UCAGCUgGCGG- -5'
12776 5' -58 NC_003387.1 + 6857 0.71 0.304391
Target:  5'- aCCGCUCAGgGcgCCaacaagacgccGGUCG-CCGUCg -3'
miRNA:   3'- gGGCGAGUCgCuaGG-----------UCAGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 48227 0.71 0.326987
Target:  5'- aCCCGCacgaUCGugucGCGc-CCGGUCGGCCGCg -3'
miRNA:   3'- -GGGCG----AGU----CGCuaGGUCAGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 34759 0.7 0.35901
Target:  5'- -aUGCUCAGCGGUUgGGagGACaGCCg -3'
miRNA:   3'- ggGCGAGUCGCUAGgUCagCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 14841 0.71 0.342729
Target:  5'- aCCGagaaa-GAUCCGGUCGACgGCCa -3'
miRNA:   3'- gGGCgagucgCUAGGUCAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 7500 0.71 0.326987
Target:  5'- aCCCGCUgGGUGA-CgAGUCuGCgGCCg -3'
miRNA:   3'- -GGGCGAgUCGCUaGgUCAGcUGgCGG- -5'
12776 5' -58 NC_003387.1 + 15994 0.78 0.119851
Target:  5'- gCCGCacuGGCuGGUCCGGUaCGGCCGCCg -3'
miRNA:   3'- gGGCGag-UCG-CUAGGUCA-GCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 33222 0.71 0.342729
Target:  5'- gCCCGCUCGGCGA------UGGCCGUCa -3'
miRNA:   3'- -GGGCGAGUCGCUaggucaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 10519 0.75 0.183821
Target:  5'- cUCgGCUCGGCGAUgcgggCCGGguUCGGCCGUCu -3'
miRNA:   3'- -GGgCGAGUCGCUA-----GGUC--AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 25797 0.71 0.304391
Target:  5'- gCCUGCUCGGCGGcCuCGGU-GGCgGCCu -3'
miRNA:   3'- -GGGCGAGUCGCUaG-GUCAgCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 47538 0.7 0.350803
Target:  5'- aCCGUUaCGGCGAggucgugCUcGUCGGCCGCa -3'
miRNA:   3'- gGGCGA-GUCGCUa------GGuCAGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 30033 0.7 0.375824
Target:  5'- gCCGC-CAGCGccgCC-GUCGAcaCCGCCc -3'
miRNA:   3'- gGGCGaGUCGCua-GGuCAGCU--GGCGG- -5'
12776 5' -58 NC_003387.1 + 2019 0.75 0.183821
Target:  5'- cCCUGCUCGGUGccgCCGa-CGGCCGCCg -3'
miRNA:   3'- -GGGCGAGUCGCua-GGUcaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 14483 0.72 0.282323
Target:  5'- gCUGCUCGGCGAggCCAcuaagggcgcgcuGUCGAUCGaCCc -3'
miRNA:   3'- gGGCGAGUCGCUa-GGU-------------CAGCUGGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.