miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 51020 1.14 0.000296
Target:  5'- gCCCGCUCAGCGAUCCAGUCGACCGCCg -3'
miRNA:   3'- -GGGCGAGUCGCUAGGUCAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 18466 0.86 0.032102
Target:  5'- gCCCGaCUCGGCGAUcagCCGGUCGAgCGCCc -3'
miRNA:   3'- -GGGC-GAGUCGCUA---GGUCAGCUgGCGG- -5'
12776 5' -58 NC_003387.1 + 21231 0.78 0.113491
Target:  5'- -gCGCagGGCGAUCCGGUCGGCauggugCGCCg -3'
miRNA:   3'- ggGCGagUCGCUAGGUCAGCUG------GCGG- -5'
12776 5' -58 NC_003387.1 + 15994 0.78 0.119851
Target:  5'- gCCGCacuGGCuGGUCCGGUaCGGCCGCCg -3'
miRNA:   3'- gGGCGag-UCG-CUAGGUCA-GCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 25989 0.77 0.123154
Target:  5'- gCCGCUCGccggggucGCGAUCCAGcUCGcGCCGCg -3'
miRNA:   3'- gGGCGAGU--------CGCUAGGUC-AGC-UGGCGg -5'
12776 5' -58 NC_003387.1 + 49067 0.77 0.130014
Target:  5'- gCCGCUCAGcCGGggcacgagCCGGUCGACgGCg -3'
miRNA:   3'- gGGCGAGUC-GCUa-------GGUCAGCUGgCGg -5'
12776 5' -58 NC_003387.1 + 47852 0.77 0.137226
Target:  5'- gCCGcCUCGGCcuUCCAGaacugcUCGGCCGCCa -3'
miRNA:   3'- gGGC-GAGUCGcuAGGUC------AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 17054 0.77 0.139461
Target:  5'- gCCCGCUCAGCcaccgcccgcggucGAggucggCCAGUgcccgccCGGCCGCCu -3'
miRNA:   3'- -GGGCGAGUCG--------------CUa-----GGUCA-------GCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 13110 0.76 0.148735
Target:  5'- gCCGCcaccUCGGCGAUCCAcucGUCGGCCucGCUg -3'
miRNA:   3'- gGGCG----AGUCGCUAGGU---CAGCUGG--CGG- -5'
12776 5' -58 NC_003387.1 + 43343 0.76 0.152763
Target:  5'- gCCCGcCUCGGgGGUCgccUCGGCCGCCa -3'
miRNA:   3'- -GGGC-GAGUCgCUAGgucAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 10864 0.76 0.161116
Target:  5'- gCCCGCUCAucaCGA-CCGccGUCGGCCGCUg -3'
miRNA:   3'- -GGGCGAGUc--GCUaGGU--CAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 22174 0.76 0.165445
Target:  5'- gCCGCggCGGCGGUCCAuGUCGgGgCGCCc -3'
miRNA:   3'- gGGCGa-GUCGCUAGGU-CAGC-UgGCGG- -5'
12776 5' -58 NC_003387.1 + 10399 0.75 0.174417
Target:  5'- gCCGCUCGGUGAUCUgcUCGuCgCGCCa -3'
miRNA:   3'- gGGCGAGUCGCUAGGucAGCuG-GCGG- -5'
12776 5' -58 NC_003387.1 + 24483 0.75 0.179065
Target:  5'- aCCGCUCGaCGAUCUgcucGGUCGAgCCGUCg -3'
miRNA:   3'- gGGCGAGUcGCUAGG----UCAGCU-GGCGG- -5'
12776 5' -58 NC_003387.1 + 10519 0.75 0.183821
Target:  5'- cUCgGCUCGGCGAUgcgggCCGGguUCGGCCGUCu -3'
miRNA:   3'- -GGgCGAGUCGCUA-----GGUC--AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 44892 0.75 0.183821
Target:  5'- uUCCGC-CuGCGcgCCGGgcaccUCGGCCGCCa -3'
miRNA:   3'- -GGGCGaGuCGCuaGGUC-----AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 2019 0.75 0.183821
Target:  5'- cCCUGCUCGGUGccgCCGa-CGGCCGCCg -3'
miRNA:   3'- -GGGCGAGUCGCua-GGUcaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 19256 0.74 0.198766
Target:  5'- aCCGcCUCGGCGA-CU--UCGGCCGCCu -3'
miRNA:   3'- gGGC-GAGUCGCUaGGucAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 24752 0.74 0.198766
Target:  5'- aCCUGC-CAGUGcuucUCgCGGUCGAUCGCCa -3'
miRNA:   3'- -GGGCGaGUCGCu---AG-GUCAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 23860 0.74 0.203978
Target:  5'- gCCGCUC-GCGGUaCCAGUCcGACcCGCa -3'
miRNA:   3'- gGGCGAGuCGCUA-GGUCAG-CUG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.