miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 121 0.67 0.514289
Target:  5'- gCCCGcCUCGaugcggucgcccucGCGAUCCg--CG-CCGCCg -3'
miRNA:   3'- -GGGC-GAGU--------------CGCUAGGucaGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 519 0.69 0.408302
Target:  5'- gCUGCUCAGCGGccugcucgacagcgUCCuGcUCGACCuGCUc -3'
miRNA:   3'- gGGCGAGUCGCU--------------AGGuC-AGCUGG-CGG- -5'
12776 5' -58 NC_003387.1 + 714 0.69 0.402024
Target:  5'- gCCGCaaGGC-AUCguGUCGACgGCCu -3'
miRNA:   3'- gGGCGagUCGcUAGguCAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 1384 0.67 0.534807
Target:  5'- -gCGCUCAGCGggUCGGggucgcgcUCGaaguugugcgaggcGCCGCCg -3'
miRNA:   3'- ggGCGAGUCGCuaGGUC--------AGC--------------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 1692 0.67 0.517346
Target:  5'- aCCGCggCGGCGGUCgAcUgGAUCGCUg -3'
miRNA:   3'- gGGCGa-GUCGCUAGgUcAgCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 1941 0.69 0.429355
Target:  5'- aUCCGCgacgcaGGCGGUUgGGgcuggGACCGCCg -3'
miRNA:   3'- -GGGCGag----UCGCUAGgUCag---CUGGCGG- -5'
12776 5' -58 NC_003387.1 + 2019 0.75 0.183821
Target:  5'- cCCUGCUCGGUGccgCCGa-CGGCCGCCg -3'
miRNA:   3'- -GGGCGAGUCGCua-GGUcaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 2324 0.68 0.467435
Target:  5'- gCCCgacguacaGCUCGGCGGU---GUCGagGCCGCCg -3'
miRNA:   3'- -GGG--------CGAGUCGCUAgguCAGC--UGGCGG- -5'
12776 5' -58 NC_003387.1 + 2624 0.66 0.601025
Target:  5'- gCUCGCgggccUCGGCGAUCguGUCGugC-UCg -3'
miRNA:   3'- -GGGCG-----AGUCGCUAGguCAGCugGcGG- -5'
12776 5' -58 NC_003387.1 + 3122 0.67 0.558747
Target:  5'- gCCGC-CAGCGGcagcacugCCAGgCcACCGCCc -3'
miRNA:   3'- gGGCGaGUCGCUa-------GGUCaGcUGGCGG- -5'
12776 5' -58 NC_003387.1 + 3194 0.67 0.527591
Target:  5'- gCCUGCUCGggcuGCGAcgUCCAGccccauugCGACaCGUCg -3'
miRNA:   3'- -GGGCGAGU----CGCU--AGGUCa-------GCUG-GCGG- -5'
12776 5' -58 NC_003387.1 + 3343 0.7 0.375824
Target:  5'- gCCCGCUCGuuuggcGCGGUC--GUCGACgGCa -3'
miRNA:   3'- -GGGCGAGU------CGCUAGguCAGCUGgCGg -5'
12776 5' -58 NC_003387.1 + 3497 0.7 0.394043
Target:  5'- gCCGCUCGGCcgccucgaccggcaGAUCCguugcgggcucagcaAcGUCGACgGCCg -3'
miRNA:   3'- gGGCGAGUCG--------------CUAGG---------------U-CAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 3664 0.66 0.601025
Target:  5'- gCCUGCcCGGUGAgcgCCAGcagCGcaACCGUCg -3'
miRNA:   3'- -GGGCGaGUCGCUa--GGUCa--GC--UGGCGG- -5'
12776 5' -58 NC_003387.1 + 4372 0.68 0.466462
Target:  5'- gCgCGCUCGGCGG-CCAGgugcuccugauacUCGcgcucgcgcGCCGCCu -3'
miRNA:   3'- -GgGCGAGUCGCUaGGUC-------------AGC---------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 4449 0.67 0.527591
Target:  5'- gCCCGCgc--CGAaggCCgAGcCGACCGCCg -3'
miRNA:   3'- -GGGCGagucGCUa--GG-UCaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 5247 0.7 0.350803
Target:  5'- aCCCGCUggccgaCGGCGAacucaaCAGcCGACuCGCCg -3'
miRNA:   3'- -GGGCGA------GUCGCUag----GUCaGCUG-GCGG- -5'
12776 5' -58 NC_003387.1 + 5973 0.67 0.527591
Target:  5'- gUCGCUCGaccCGG-CCGGUUG-CCGCCg -3'
miRNA:   3'- gGGCGAGUc--GCUaGGUCAGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 6018 0.67 0.558747
Target:  5'- gCCUGCUUGGCG-UCCAG-CGGCaCGa- -3'
miRNA:   3'- -GGGCGAGUCGCuAGGUCaGCUG-GCgg -5'
12776 5' -58 NC_003387.1 + 6407 0.67 0.548297
Target:  5'- cCCCGCUugcccuuccCAGCGGcCCGcugCG-CCGCCu -3'
miRNA:   3'- -GGGCGA---------GUCGCUaGGUca-GCuGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.