miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 52578 0.69 0.438705
Target:  5'- gCCCaGCUCGGCGGcgcggaucgCgAGggCGACCGCa -3'
miRNA:   3'- -GGG-CGAGUCGCUa--------GgUCa-GCUGGCGg -5'
12776 5' -58 NC_003387.1 + 52431 0.68 0.467435
Target:  5'- aCCgGCUCGGUcguGAUCguGcacUCGACCGgCg -3'
miRNA:   3'- -GGgCGAGUCG---CUAGguC---AGCUGGCgG- -5'
12776 5' -58 NC_003387.1 + 52366 0.67 0.507182
Target:  5'- aCCGCUC-GCG---CAGaUCGACCGCg -3'
miRNA:   3'- gGGCGAGuCGCuagGUC-AGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 52256 0.7 0.367351
Target:  5'- --aGCUCGcGcCGGUCgCcGUCGGCCGCCg -3'
miRNA:   3'- gggCGAGU-C-GCUAG-GuCAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 51708 0.72 0.287193
Target:  5'- aCCCGCaaacgcaaggccgCAGCGcAUCCgaccccGGUCGAgCGCCu -3'
miRNA:   3'- -GGGCGa------------GUCGC-UAGG------UCAGCUgGCGG- -5'
12776 5' -58 NC_003387.1 + 51020 1.14 0.000296
Target:  5'- gCCCGCUCAGCGAUCCAGUCGACCGCCg -3'
miRNA:   3'- -GGGCGAGUCGCUAGGUCAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 50687 0.7 0.350803
Target:  5'- gCCaGCUCGGCGA--CGG-CGGCCGUCg -3'
miRNA:   3'- gGG-CGAGUCGCUagGUCaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 50569 0.7 0.364835
Target:  5'- gCUCGCggcucaucgaguccUCGGgGAacUCCAcGUCGGCCGCUg -3'
miRNA:   3'- -GGGCG--------------AGUCgCU--AGGU-CAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 49415 0.66 0.622346
Target:  5'- gCCacaGCaccUCGGCGccCgAGUCGGCgGCCg -3'
miRNA:   3'- -GGg--CG---AGUCGCuaGgUCAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 49360 0.66 0.622346
Target:  5'- gCCaGCUUGGUGAUgCcGUCGACgaccgCGCCa -3'
miRNA:   3'- gGG-CGAGUCGCUAgGuCAGCUG-----GCGG- -5'
12776 5' -58 NC_003387.1 + 49111 0.73 0.258952
Target:  5'- gCCCGCUCAGCucggCCAGgaCGcccugaaacucaggcGCCGCCg -3'
miRNA:   3'- -GGGCGAGUCGcua-GGUCa-GC---------------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 49067 0.77 0.130014
Target:  5'- gCCGCUCAGcCGGggcacgagCCGGUCGACgGCg -3'
miRNA:   3'- gGGCGAGUC-GCUa-------GGUCAGCUGgCGg -5'
12776 5' -58 NC_003387.1 + 48803 0.69 0.438705
Target:  5'- gCCGCggCGGCGG-CCA-UCGucCCGCCg -3'
miRNA:   3'- gGGCGa-GUCGCUaGGUcAGCu-GGCGG- -5'
12776 5' -58 NC_003387.1 + 48773 0.7 0.375824
Target:  5'- -gUGCUCGGCGcagCCAGcUCG-CCGCUg -3'
miRNA:   3'- ggGCGAGUCGCua-GGUC-AGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 48312 0.68 0.467435
Target:  5'- gCCCaGCUCGGCGucgacguUCUgccaguAGUCGACgGCg -3'
miRNA:   3'- -GGG-CGAGUCGCu------AGG------UCAGCUGgCGg -5'
12776 5' -58 NC_003387.1 + 48227 0.71 0.326987
Target:  5'- aCCCGCacgaUCGugucGCGc-CCGGUCGGCCGCg -3'
miRNA:   3'- -GGGCG----AGU----CGCuaGGUCAGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 48140 0.67 0.527591
Target:  5'- aCCCGCgcgCAGCGcgCCAc-CGAggcCCGCg -3'
miRNA:   3'- -GGGCGa--GUCGCuaGGUcaGCU---GGCGg -5'
12776 5' -58 NC_003387.1 + 48073 0.68 0.497104
Target:  5'- gCCGCUUGGCGccgggccuuGUCCuuaucGGccUUGGCCGCCu -3'
miRNA:   3'- gGGCGAGUCGC---------UAGG-----UC--AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 47852 0.77 0.137226
Target:  5'- gCCGcCUCGGCcuUCCAGaacugcUCGGCCGCCa -3'
miRNA:   3'- gGGC-GAGUCGcuAGGUC------AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 47538 0.7 0.350803
Target:  5'- aCCGUUaCGGCGAggucgugCUcGUCGGCCGCa -3'
miRNA:   3'- gGGCGA-GUCGCUa------GGuCAGCUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.