Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12776 | 5' | -58 | NC_003387.1 | + | 12857 | 0.66 | 0.622346 |
Target: 5'- aCCGCacCGGCGggCCuGUCuuuGCCGUCu -3' miRNA: 3'- gGGCGa-GUCGCuaGGuCAGc--UGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 16318 | 0.66 | 0.601025 |
Target: 5'- --aGCUCGGCGccgguGUCgAuGUUGACCGCg -3' miRNA: 3'- gggCGAGUCGC-----UAGgU-CAGCUGGCGg -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 3664 | 0.66 | 0.601025 |
Target: 5'- gCCUGCcCGGUGAgcgCCAGcagCGcaACCGUCg -3' miRNA: 3'- -GGGCGaGUCGCUa--GGUCa--GC--UGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 2624 | 0.66 | 0.601025 |
Target: 5'- gCUCGCgggccUCGGCGAUCguGUCGugC-UCg -3' miRNA: 3'- -GGGCG-----AGUCGCUAGguCAGCugGcGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 39211 | 0.66 | 0.590398 |
Target: 5'- -aCGCugUCAGCGAcUCCAccggCGAacCCGCCg -3' miRNA: 3'- ggGCG--AGUCGCU-AGGUca--GCU--GGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 42617 | 0.66 | 0.589338 |
Target: 5'- uCgCGCUCAGCGcgcauugCCAugaacuuGcCGACCGUCg -3' miRNA: 3'- -GgGCGAGUCGCua-----GGU-------CaGCUGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 33980 | 0.66 | 0.589338 |
Target: 5'- gCUGCcgCAGCgGGUCgCGGUCGacgacgaGCUGCCu -3' miRNA: 3'- gGGCGa-GUCG-CUAG-GUCAGC-------UGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 40248 | 0.66 | 0.588277 |
Target: 5'- uUCUGCUCGGacg-CCAGgcccgcggccaGGCCGCCg -3' miRNA: 3'- -GGGCGAGUCgcuaGGUCag---------CUGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 39746 | 0.66 | 0.579805 |
Target: 5'- gCUCGUcgUCGGUGGccgcCCGGUaCGAgCCGCCa -3' miRNA: 3'- -GGGCG--AGUCGCUa---GGUCA-GCU-GGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 15561 | 0.66 | 0.601025 |
Target: 5'- gCCaGCUCGGUGA-CCAugCGcCCGCCc -3' miRNA: 3'- gGG-CGAGUCGCUaGGUcaGCuGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 44427 | 0.66 | 0.601025 |
Target: 5'- gCCGCgcCGGUGAUCCAcaCG-UCGCCc -3' miRNA: 3'- gGGCGa-GUCGCUAGGUcaGCuGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 47156 | 0.66 | 0.607414 |
Target: 5'- gCCaGCUCGGCGGcgucagccuugagCUGGUCGuaAUCGCCg -3' miRNA: 3'- gGG-CGAGUCGCUa------------GGUCAGC--UGGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 41024 | 0.66 | 0.622346 |
Target: 5'- aUCGCgaCAGCGAgCCcGaCGACCGCg -3' miRNA: 3'- gGGCGa-GUCGCUaGGuCaGCUGGCGg -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 6615 | 0.66 | 0.622346 |
Target: 5'- aCCGCagCAGcCGGaaCAuGUCGGCgGCCg -3' miRNA: 3'- gGGCGa-GUC-GCUagGU-CAGCUGgCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 49415 | 0.66 | 0.622346 |
Target: 5'- gCCacaGCaccUCGGCGccCgAGUCGGCgGCCg -3' miRNA: 3'- -GGg--CG---AGUCGCuaGgUCAGCUGgCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 49360 | 0.66 | 0.622346 |
Target: 5'- gCCaGCUUGGUGAUgCcGUCGACgaccgCGCCa -3' miRNA: 3'- gGG-CGAGUCGCUAgGuCAGCUG-----GCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 16044 | 0.66 | 0.622346 |
Target: 5'- gCCCGCggugaacGCGG-CCAgGUCGGCgaGCCg -3' miRNA: 3'- -GGGCGagu----CGCUaGGU-CAGCUGg-CGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 10905 | 0.66 | 0.622346 |
Target: 5'- -aUGCUCAGCucgucgauGAUcugCCAGgCGugCGCCa -3' miRNA: 3'- ggGCGAGUCG--------CUA---GGUCaGCugGCGG- -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 12971 | 0.66 | 0.621279 |
Target: 5'- aCCGgUCGGCGAgCUGGUCGucgauaaucucgcGCUGCg -3' miRNA: 3'- gGGCgAGUCGCUaGGUCAGC-------------UGGCGg -5' |
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12776 | 5' | -58 | NC_003387.1 | + | 31267 | 0.66 | 0.611677 |
Target: 5'- gCUGCgcCAGCGGggccgggUUAGUUGACCaGCCg -3' miRNA: 3'- gGGCGa-GUCGCUa------GGUCAGCUGG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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