miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 6615 0.66 0.622346
Target:  5'- aCCGCagCAGcCGGaaCAuGUCGGCgGCCg -3'
miRNA:   3'- gGGCGa-GUC-GCUagGU-CAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 6668 0.68 0.448171
Target:  5'- gCCGacgCGGCGAUCgAGgUGAUUGCCg -3'
miRNA:   3'- gGGCga-GUCGCUAGgUCaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 6698 0.66 0.578747
Target:  5'- -aCGCUCGGCGucuugcaCCGcgggcaguucaccGUCGACuCGCCc -3'
miRNA:   3'- ggGCGAGUCGCua-----GGU-------------CAGCUG-GCGG- -5'
12776 5' -58 NC_003387.1 + 6857 0.71 0.304391
Target:  5'- aCCGCUCAGgGcgCCaacaagacgccGGUCG-CCGUCg -3'
miRNA:   3'- gGGCGAGUCgCuaGG-----------UCAGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 7500 0.71 0.326987
Target:  5'- aCCCGCUgGGUGA-CgAGUCuGCgGCCg -3'
miRNA:   3'- -GGGCGAgUCGCUaGgUCAGcUGgCGG- -5'
12776 5' -58 NC_003387.1 + 7566 0.7 0.393162
Target:  5'- gCCUGCUCAcGCGA-CCAccucCGAgCGCCg -3'
miRNA:   3'- -GGGCGAGU-CGCUaGGUca--GCUgGCGG- -5'
12776 5' -58 NC_003387.1 + 8805 0.67 0.548297
Target:  5'- uCCCGCUCAGCucGcgCCcGaacUUGGCCGUa -3'
miRNA:   3'- -GGGCGAGUCG--CuaGGuC---AGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 9066 0.67 0.548297
Target:  5'- gCCCucCUCGGCGA-CUAGcUgGugCGCCa -3'
miRNA:   3'- -GGGc-GAGUCGCUaGGUC-AgCugGCGG- -5'
12776 5' -58 NC_003387.1 + 9739 0.66 0.601025
Target:  5'- gUCUGCgCGGCGGUaaggcaAGUCGAggacgcgauCCGCCg -3'
miRNA:   3'- -GGGCGaGUCGCUAgg----UCAGCU---------GGCGG- -5'
12776 5' -58 NC_003387.1 + 10399 0.75 0.174417
Target:  5'- gCCGCUCGGUGAUCUgcUCGuCgCGCCa -3'
miRNA:   3'- gGGCGAGUCGCUAGGucAGCuG-GCGG- -5'
12776 5' -58 NC_003387.1 + 10498 0.68 0.448171
Target:  5'- cCUCGCccaucgCGGUGcgCCGGUCG-CCGUCc -3'
miRNA:   3'- -GGGCGa-----GUCGCuaGGUCAGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 10519 0.75 0.183821
Target:  5'- cUCgGCUCGGCGAUgcgggCCGGguUCGGCCGUCu -3'
miRNA:   3'- -GGgCGAGUCGCUA-----GGUC--AGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 10650 0.71 0.31932
Target:  5'- aCCCGCagCAcGCGcgCCAgGUCGuACaCGCCg -3'
miRNA:   3'- -GGGCGa-GU-CGCuaGGU-CAGC-UG-GCGG- -5'
12776 5' -58 NC_003387.1 + 10703 0.69 0.420122
Target:  5'- -gCGCUCGGCGAccaucacggCCAGgCGGCC-CCa -3'
miRNA:   3'- ggGCGAGUCGCUa--------GGUCaGCUGGcGG- -5'
12776 5' -58 NC_003387.1 + 10864 0.76 0.161116
Target:  5'- gCCCGCUCAucaCGA-CCGccGUCGGCCGCUg -3'
miRNA:   3'- -GGGCGAGUc--GCUaGGU--CAGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 10905 0.66 0.622346
Target:  5'- -aUGCUCAGCucgucgauGAUcugCCAGgCGugCGCCa -3'
miRNA:   3'- ggGCGAGUCG--------CUA---GGUCaGCugGCGG- -5'
12776 5' -58 NC_003387.1 + 11102 0.66 0.60848
Target:  5'- gCCGCUC-GCGA-CCGGgcuuaugggcguguUCGAcaagcugaCCGCCg -3'
miRNA:   3'- gGGCGAGuCGCUaGGUC--------------AGCU--------GGCGG- -5'
12776 5' -58 NC_003387.1 + 11320 0.74 0.218645
Target:  5'- --aGCUCGGCGAgauugUCCAGUCGuucaaaaacauuggGCCGUCa -3'
miRNA:   3'- gggCGAGUCGCU-----AGGUCAGC--------------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 11592 0.67 0.53791
Target:  5'- gCCG-UCGGCgcgcugccacuuGAUCCGGUCGugCagcGCCa -3'
miRNA:   3'- gGGCgAGUCG------------CUAGGUCAGCugG---CGG- -5'
12776 5' -58 NC_003387.1 + 12270 0.67 0.548297
Target:  5'- uCCCGCgccUGGCGA-CCGG-CGGCCGg- -3'
miRNA:   3'- -GGGCGa--GUCGCUaGGUCaGCUGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.