miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 41442 0.66 0.776901
Target:  5'- gGUCAcCGgcgCGGCccUGACGCCGc -3'
miRNA:   3'- gCAGUuGCacaGCCGcaACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 41686 0.67 0.682541
Target:  5'- gCGUCAACccgaccCGGCGUcgcGGCGCCGa -3'
miRNA:   3'- -GCAGUUGcaca--GCCGCAa--CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 42140 0.66 0.735961
Target:  5'- uGUgAACGUGgCGGCGgUGGCccGCUGUc -3'
miRNA:   3'- gCAgUUGCACaGCCGCaACUG--CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 43220 0.69 0.595111
Target:  5'- gGUCGugccGUCGGgguacuCGUUGACGCCGUa -3'
miRNA:   3'- gCAGUugcaCAGCC------GCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 44028 0.68 0.649828
Target:  5'- uCGUCGACGUcgGUCGGCagcGGCguGCCGa -3'
miRNA:   3'- -GCAGUUGCA--CAGCCGcaaCUG--CGGCa -5'
12777 5' -54.7 NC_003387.1 + 45626 0.65 0.785811
Target:  5'- aGUCGGCGUacggcgaggcgaaGaUCGGCcgccUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCA-------------C-AGCCGca--ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 47454 0.7 0.541155
Target:  5'- aCGUuuaCGGCGaGUCGGCuGUUGAguuCGCCGUc -3'
miRNA:   3'- -GCA---GUUGCaCAGCCG-CAACU---GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 48052 0.68 0.638877
Target:  5'- uCGUCuugcuuGGCGgcGUCGGCcgcUUGGCGCCGg -3'
miRNA:   3'- -GCAG------UUGCa-CAGCCGc--AACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 49507 0.7 0.498168
Target:  5'- gCGUCGACGUGUCgcaauggGGCug-GACGUCGc -3'
miRNA:   3'- -GCAGUUGCACAG-------CCGcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 49891 0.74 0.309257
Target:  5'- uCGUCGGCGUG-CGGcCGUUGACGaaaCGc -3'
miRNA:   3'- -GCAGUUGCACaGCC-GCAACUGCg--GCa -5'
12777 5' -54.7 NC_003387.1 + 50860 1.07 0.001788
Target:  5'- gCGUCAACGUGUCGGCGUUGACGCCGUu -3'
miRNA:   3'- -GCAGUUGCACAGCCGCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 51301 0.67 0.714824
Target:  5'- uGcCAGCucGUCGGCGgcGGCGCCu- -3'
miRNA:   3'- gCaGUUGcaCAGCCGCaaCUGCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.