miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 23037 0.68 0.637782
Target:  5'- -uUCAACGUGccCGGCGgcgUGccgaucacgcacuACGCCGUg -3'
miRNA:   3'- gcAGUUGCACa-GCCGCa--AC-------------UGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 23049 0.68 0.616968
Target:  5'- aCGUCGACGUcgacGUCGGCGa-GGCGuUCGa -3'
miRNA:   3'- -GCAGUUGCA----CAGCCGCaaCUGC-GGCa -5'
12777 5' -54.7 NC_003387.1 + 24222 0.66 0.746379
Target:  5'- gGUUAGCGUcGUCGuG-GUUGcCGCCGa -3'
miRNA:   3'- gCAGUUGCA-CAGC-CgCAACuGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 26792 0.66 0.756683
Target:  5'- cCG-CAGCcaUGUgGGUGUggGGCGCCGUa -3'
miRNA:   3'- -GCaGUUGc-ACAgCCGCAa-CUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 27022 0.69 0.573378
Target:  5'- aCGUCA---UGUCGGCGUUGGCcuucucGUCGUu -3'
miRNA:   3'- -GCAGUugcACAGCCGCAACUG------CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 27517 0.7 0.530545
Target:  5'- aCGUCAgcaccaugauGCGcUGccgCGGCGgcGGCGCCGg -3'
miRNA:   3'- -GCAGU----------UGC-ACa--GCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 27958 0.68 0.638877
Target:  5'- gCGcUCGGCGUGcUCGGC-UUGGCcgguGCCGUu -3'
miRNA:   3'- -GC-AGUUGCAC-AGCCGcAACUG----CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 29565 0.77 0.210756
Target:  5'- gGUCGuagguAUGUGUCGGCG-UGACGUCGa -3'
miRNA:   3'- gCAGU-----UGCACAGCCGCaACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 29860 0.67 0.725438
Target:  5'- uGUCGAUucGUCGGCGagGGCGCUu- -3'
miRNA:   3'- gCAGUUGcaCAGCCGCaaCUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 30243 0.66 0.776901
Target:  5'- aGUUGGCcggGUcGUCGGgGUcGGCGCCGg -3'
miRNA:   3'- gCAGUUG---CA-CAGCCgCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 30964 0.74 0.340847
Target:  5'- --aCAGCGcGUCGGUGgcgcUGACGCCGa -3'
miRNA:   3'- gcaGUUGCaCAGCCGCa---ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 31649 0.66 0.732814
Target:  5'- gCGUCAgcaugcccaagagcACGauauacgCGGCGUUcGACGCCGa -3'
miRNA:   3'- -GCAGU--------------UGCaca----GCCGCAA-CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 32597 0.72 0.392469
Target:  5'- gGUUucgGUGUCGGUGUUGGUGCCGUc -3'
miRNA:   3'- gCAGuugCACAGCCGCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 35415 0.67 0.725438
Target:  5'- gGUCAGCgGUGUgauUGGCGgauuCGCCGg -3'
miRNA:   3'- gCAGUUG-CACA---GCCGCaacuGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 35635 0.78 0.194627
Target:  5'- uCGUCGAUaGUGUUgggGGCGUUGACGUCGa -3'
miRNA:   3'- -GCAGUUG-CACAG---CCGCAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 36134 0.7 0.509561
Target:  5'- uCGUaguaaAGCGUccCGGCGUUGcCGCCGUu -3'
miRNA:   3'- -GCAg----UUGCAcaGCCGCAACuGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 36901 0.68 0.660762
Target:  5'- gCGUCGGCGUcacaacCGGCGgcGACGCgGc -3'
miRNA:   3'- -GCAGUUGCAca----GCCGCaaCUGCGgCa -5'
12777 5' -54.7 NC_003387.1 + 38448 0.69 0.584225
Target:  5'- aGUCGACGcGcUCGGgcUUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCaC-AGCCgcAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 40366 0.67 0.704129
Target:  5'- cCGUC-GCGg--CGGCGUUGGugaugaacuCGCCGUu -3'
miRNA:   3'- -GCAGuUGCacaGCCGCAACU---------GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 41010 0.67 0.704129
Target:  5'- gCGUCGACGgccggGUCGacuGCGUcGACGgCGa -3'
miRNA:   3'- -GCAGUUGCa----CAGC---CGCAaCUGCgGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.