miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 31649 0.66 0.732814
Target:  5'- gCGUCAgcaugcccaagagcACGauauacgCGGCGUUcGACGCCGa -3'
miRNA:   3'- -GCAGU--------------UGCaca----GCCGCAA-CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 30964 0.74 0.340847
Target:  5'- --aCAGCGcGUCGGUGgcgcUGACGCCGa -3'
miRNA:   3'- gcaGUUGCaCAGCCGCa---ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 30243 0.66 0.776901
Target:  5'- aGUUGGCcggGUcGUCGGgGUcGGCGCCGg -3'
miRNA:   3'- gCAGUUG---CA-CAGCCgCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 29860 0.67 0.725438
Target:  5'- uGUCGAUucGUCGGCGagGGCGCUu- -3'
miRNA:   3'- gCAGUUGcaCAGCCGCaaCUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 29565 0.77 0.210756
Target:  5'- gGUCGuagguAUGUGUCGGCG-UGACGUCGa -3'
miRNA:   3'- gCAGU-----UGCACAGCCGCaACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 27958 0.68 0.638877
Target:  5'- gCGcUCGGCGUGcUCGGC-UUGGCcgguGCCGUu -3'
miRNA:   3'- -GC-AGUUGCAC-AGCCGcAACUG----CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 27517 0.7 0.530545
Target:  5'- aCGUCAgcaccaugauGCGcUGccgCGGCGgcGGCGCCGg -3'
miRNA:   3'- -GCAGU----------UGC-ACa--GCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 27022 0.69 0.573378
Target:  5'- aCGUCA---UGUCGGCGUUGGCcuucucGUCGUu -3'
miRNA:   3'- -GCAGUugcACAGCCGCAACUG------CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 26792 0.66 0.756683
Target:  5'- cCG-CAGCcaUGUgGGUGUggGGCGCCGUa -3'
miRNA:   3'- -GCaGUUGc-ACAgCCGCAa-CUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 24222 0.66 0.746379
Target:  5'- gGUUAGCGUcGUCGuG-GUUGcCGCCGa -3'
miRNA:   3'- gCAGUUGCA-CAGC-CgCAACuGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 23049 0.68 0.616968
Target:  5'- aCGUCGACGUcgacGUCGGCGa-GGCGuUCGa -3'
miRNA:   3'- -GCAGUUGCA----CAGCCGCaaCUGC-GGCa -5'
12777 5' -54.7 NC_003387.1 + 23037 0.68 0.637782
Target:  5'- -uUCAACGUGccCGGCGgcgUGccgaucacgcacuACGCCGUg -3'
miRNA:   3'- gcAGUUGCACa-GCCGCa--AC-------------UGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 22976 0.7 0.4992
Target:  5'- gGUCAuCGUGUCGGgc--GGCGCCGa -3'
miRNA:   3'- gCAGUuGCACAGCCgcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 22692 0.67 0.714824
Target:  5'- uGUCGACGg--CGGCGcUGGCgGCCu- -3'
miRNA:   3'- gCAGUUGCacaGCCGCaACUG-CGGca -5'
12777 5' -54.7 NC_003387.1 + 21798 0.67 0.714824
Target:  5'- cCG-CGGCGgccagcUCGGCGagcGACGCCGUg -3'
miRNA:   3'- -GCaGUUGCac----AGCCGCaa-CUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 19594 0.75 0.279245
Target:  5'- gCGUCGACGUGU-GGCaGUcguuccuUGACGCCGc -3'
miRNA:   3'- -GCAGUUGCACAgCCG-CA-------ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 19444 0.69 0.561502
Target:  5'- gCGUUAaggccgugcgggcGCGUGUCaGUGUgGGCGCCGa -3'
miRNA:   3'- -GCAGU-------------UGCACAGcCGCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 17141 0.66 0.766861
Target:  5'- uGUCGACcaGcUCGGCcagGGCGCCGa -3'
miRNA:   3'- gCAGUUGcaC-AGCCGcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 16713 0.7 0.509561
Target:  5'- aCGuUCGAccuCGUGaUCGGCGacGACGCCGa -3'
miRNA:   3'- -GC-AGUU---GCAC-AGCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 15177 0.66 0.746379
Target:  5'- cCGUCGGCGacgaucgCGGC-UUGAaCGCCGUu -3'
miRNA:   3'- -GCAGUUGCaca----GCCGcAACU-GCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.