miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 31649 0.66 0.732814
Target:  5'- gCGUCAgcaugcccaagagcACGauauacgCGGCGUUcGACGCCGa -3'
miRNA:   3'- -GCAGU--------------UGCaca----GCCGCAA-CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 45626 0.65 0.785811
Target:  5'- aGUCGGCGUacggcgaggcgaaGaUCGGCcgccUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCA-------------C-AGCCGca--ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 19594 0.75 0.279245
Target:  5'- gCGUCGACGUGU-GGCaGUcguuccuUGACGCCGc -3'
miRNA:   3'- -GCAGUUGCACAgCCG-CA-------ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 50860 1.07 0.001788
Target:  5'- gCGUCAACGUGUCGGCGUUGACGCCGUu -3'
miRNA:   3'- -GCAGUUGCACAGCCGCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 4129 0.66 0.733864
Target:  5'- gGUUAGCGgcgggcuuuuggGUCGGCGaggcgGGCGUCGa -3'
miRNA:   3'- gCAGUUGCa-----------CAGCCGCaa---CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 35635 0.78 0.194627
Target:  5'- uCGUCGAUaGUGUUgggGGCGUUGACGUCGa -3'
miRNA:   3'- -GCAGUUG-CACAG---CCGCAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 29565 0.77 0.210756
Target:  5'- gGUCGuagguAUGUGUCGGCG-UGACGUCGa -3'
miRNA:   3'- gCAGU-----UGCACAGCCGCaACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 11027 0.76 0.238949
Target:  5'- uCGUCGGCGccgcgacgccggGUCGG-GUUGACGCCGa -3'
miRNA:   3'- -GCAGUUGCa-----------CAGCCgCAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 35415 0.67 0.725438
Target:  5'- gGUCAGCgGUGUgauUGGCGgauuCGCCGg -3'
miRNA:   3'- gCAGUUG-CACA---GCCGCaacuGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 14170 0.67 0.681456
Target:  5'- aCGUCAugGUGcgcuugcUCuGCGccaccaUGACGCCGUc -3'
miRNA:   3'- -GCAGUugCAC-------AGcCGCa-----ACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 44028 0.68 0.649828
Target:  5'- uCGUCGACGUcgGUCGGCagcGGCguGCCGa -3'
miRNA:   3'- -GCAGUUGCA--CAGCCGcaaCUG--CGGCa -5'
12777 5' -54.7 NC_003387.1 + 48052 0.68 0.638877
Target:  5'- uCGUCuugcuuGGCGgcGUCGGCcgcUUGGCGCCGg -3'
miRNA:   3'- -GCAG------UUGCa-CAGCCGc--AACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 27958 0.68 0.638877
Target:  5'- gCGcUCGGCGUGcUCGGC-UUGGCcgguGCCGUu -3'
miRNA:   3'- -GC-AGUUGCAC-AGCCGcAACUG----CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 23049 0.68 0.616968
Target:  5'- aCGUCGACGUcgacGUCGGCGa-GGCGuUCGa -3'
miRNA:   3'- -GCAGUUGCA----CAGCCGCaaCUGC-GGCa -5'
12777 5' -54.7 NC_003387.1 + 27517 0.7 0.530545
Target:  5'- aCGUCAgcaccaugauGCGcUGccgCGGCGgcGGCGCCGg -3'
miRNA:   3'- -GCAGU----------UGC-ACa--GCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 36134 0.7 0.509561
Target:  5'- uCGUaguaaAGCGUccCGGCGUUGcCGCCGUu -3'
miRNA:   3'- -GCAg----UUGCAcaGCCGCAACuGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 9301 0.72 0.401554
Target:  5'- uCGUCGAacuUGcUGUCGGCGUUGACcuCCGa -3'
miRNA:   3'- -GCAGUU---GC-ACAGCCGCAACUGc-GGCa -5'
12777 5' -54.7 NC_003387.1 + 32597 0.72 0.392469
Target:  5'- gGUUucgGUGUCGGUGUUGGUGCCGUc -3'
miRNA:   3'- gCAGuugCACAGCCGCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 30964 0.74 0.340847
Target:  5'- --aCAGCGcGUCGGUGgcgcUGACGCCGa -3'
miRNA:   3'- gcaGUUGCaCAGCCGCa---ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 49891 0.74 0.309257
Target:  5'- uCGUCGGCGUG-CGGcCGUUGACGaaaCGc -3'
miRNA:   3'- -GCAGUUGCACaGCC-GCAACUGCg--GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.