miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 19594 0.75 0.279245
Target:  5'- gCGUCGACGUGU-GGCaGUcguuccuUGACGCCGc -3'
miRNA:   3'- -GCAGUUGCACAgCCG-CA-------ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 29860 0.67 0.725438
Target:  5'- uGUCGAUucGUCGGCGagGGCGCUu- -3'
miRNA:   3'- gCAGUUGcaCAGCCGCaaCUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 42140 0.66 0.735961
Target:  5'- uGUgAACGUGgCGGCGgUGGCccGCUGUc -3'
miRNA:   3'- gCAgUUGCACaGCCGCaACUG--CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 45626 0.65 0.785811
Target:  5'- aGUCGGCGUacggcgaggcgaaGaUCGGCcgccUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCA-------------C-AGCCGca--ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 22976 0.7 0.4992
Target:  5'- gGUCAuCGUGUCGGgc--GGCGCCGa -3'
miRNA:   3'- gCAGUuGCACAGCCgcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 16713 0.7 0.509561
Target:  5'- aCGuUCGAccuCGUGaUCGGCGacGACGCCGa -3'
miRNA:   3'- -GC-AGUU---GCAC-AGCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 47454 0.7 0.541155
Target:  5'- aCGUuuaCGGCGaGUCGGCuGUUGAguuCGCCGUc -3'
miRNA:   3'- -GCA---GUUGCaCAGCCG-CAACU---GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 19444 0.69 0.561502
Target:  5'- gCGUUAaggccgugcgggcGCGUGUCaGUGUgGGCGCCGa -3'
miRNA:   3'- -GCAGU-------------UGCACAGcCGCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 36901 0.68 0.660762
Target:  5'- gCGUCGGCGUcacaacCGGCGgcGACGCgGc -3'
miRNA:   3'- -GCAGUUGCAca----GCCGCaaCUGCGgCa -5'
12777 5' -54.7 NC_003387.1 + 21798 0.67 0.714824
Target:  5'- cCG-CGGCGgccagcUCGGCGagcGACGCCGUg -3'
miRNA:   3'- -GCaGUUGCac----AGCCGCaa-CUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 41686 0.67 0.682541
Target:  5'- gCGUCAACccgaccCGGCGUcgcGGCGCCGa -3'
miRNA:   3'- -GCAGUUGcaca--GCCGCAa--CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 23037 0.68 0.637782
Target:  5'- -uUCAACGUGccCGGCGgcgUGccgaucacgcacuACGCCGUg -3'
miRNA:   3'- gcAGUUGCACa-GCCGCa--AC-------------UGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 4825 0.71 0.448914
Target:  5'- uCGuUCGACGcgcuUGUCGGCGacgUGcACGCCGa -3'
miRNA:   3'- -GC-AGUUGC----ACAGCCGCa--AC-UGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 41010 0.67 0.704129
Target:  5'- gCGUCGACGgccggGUCGacuGCGUcGACGgCGa -3'
miRNA:   3'- -GCAGUUGCa----CAGC---CGCAaCUGCgGCa -5'
12777 5' -54.7 NC_003387.1 + 12888 0.71 0.478766
Target:  5'- gCGUCAACGUGagCGGCcucGACGgCGUg -3'
miRNA:   3'- -GCAGUUGCACa-GCCGcaaCUGCgGCA- -5'
12777 5' -54.7 NC_003387.1 + 12935 0.69 0.599475
Target:  5'- uCGUCGGCGcucggcagugccacGUCGGCGUcUGGCgGCUGUa -3'
miRNA:   3'- -GCAGUUGCa-------------CAGCCGCA-ACUG-CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 51301 0.67 0.714824
Target:  5'- uGcCAGCucGUCGGCGgcGGCGCCu- -3'
miRNA:   3'- gCaGUUGcaCAGCCGCaaCUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 31649 0.66 0.732814
Target:  5'- gCGUCAgcaugcccaagagcACGauauacgCGGCGUUcGACGCCGa -3'
miRNA:   3'- -GCAGU--------------UGCaca----GCCGCAA-CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 49507 0.7 0.498168
Target:  5'- gCGUCGACGUGUCgcaauggGGCug-GACGUCGc -3'
miRNA:   3'- -GCAGUUGCACAG-------CCGcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 13649 0.7 0.541155
Target:  5'- cCGUCGGCGgcggcucgGUCGcCGagGGCGCCGUc -3'
miRNA:   3'- -GCAGUUGCa-------CAGCcGCaaCUGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.