Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12777 | 5' | -54.7 | NC_003387.1 | + | 45626 | 0.65 | 0.785811 |
Target: 5'- aGUCGGCGUacggcgaggcgaaGaUCGGCcgccUGGCGCCGa -3' miRNA: 3'- gCAGUUGCA-------------C-AGCCGca--ACUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 1465 | 0.66 | 0.766861 |
Target: 5'- uCGUCGAgGUcGUCgagggccagGGCGUcGACGUCGa -3' miRNA: 3'- -GCAGUUgCA-CAG---------CCGCAaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 17141 | 0.66 | 0.766861 |
Target: 5'- uGUCGACcaGcUCGGCcagGGCGCCGa -3' miRNA: 3'- gCAGUUGcaC-AGCCGcaaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 15177 | 0.66 | 0.746379 |
Target: 5'- cCGUCGGCGacgaucgCGGC-UUGAaCGCCGUu -3' miRNA: 3'- -GCAGUUGCaca----GCCGcAACU-GCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 24222 | 0.66 | 0.746379 |
Target: 5'- gGUUAGCGUcGUCGuG-GUUGcCGCCGa -3' miRNA: 3'- gCAGUUGCA-CAGC-CgCAACuGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 4129 | 0.66 | 0.733864 |
Target: 5'- gGUUAGCGgcgggcuuuuggGUCGGCGaggcgGGCGUCGa -3' miRNA: 3'- gCAGUUGCa-----------CAGCCGCaa---CUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 30243 | 0.66 | 0.776901 |
Target: 5'- aGUUGGCcggGUcGUCGGgGUcGGCGCCGg -3' miRNA: 3'- gCAGUUG---CA-CAGCCgCAaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 42140 | 0.66 | 0.735961 |
Target: 5'- uGUgAACGUGgCGGCGgUGGCccGCUGUc -3' miRNA: 3'- gCAgUUGCACaGCCGCaACUG--CGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 41442 | 0.66 | 0.776901 |
Target: 5'- gGUCAcCGgcgCGGCccUGACGCCGc -3' miRNA: 3'- gCAGUuGCacaGCCGcaACUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 26792 | 0.66 | 0.756683 |
Target: 5'- cCG-CAGCcaUGUgGGUGUggGGCGCCGUa -3' miRNA: 3'- -GCaGUUGc-ACAgCCGCAa-CUGCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 31649 | 0.66 | 0.732814 |
Target: 5'- gCGUCAgcaugcccaagagcACGauauacgCGGCGUUcGACGCCGa -3' miRNA: 3'- -GCAGU--------------UGCaca----GCCGCAA-CUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 21798 | 0.67 | 0.714824 |
Target: 5'- cCG-CGGCGgccagcUCGGCGagcGACGCCGUg -3' miRNA: 3'- -GCaGUUGCac----AGCCGCaa-CUGCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 29860 | 0.67 | 0.725438 |
Target: 5'- uGUCGAUucGUCGGCGagGGCGCUu- -3' miRNA: 3'- gCAGUUGcaCAGCCGCaaCUGCGGca -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 41010 | 0.67 | 0.704129 |
Target: 5'- gCGUCGACGgccggGUCGacuGCGUcGACGgCGa -3' miRNA: 3'- -GCAGUUGCa----CAGC---CGCAaCUGCgGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 51301 | 0.67 | 0.714824 |
Target: 5'- uGcCAGCucGUCGGCGgcGGCGCCu- -3' miRNA: 3'- gCaGUUGcaCAGCCGCaaCUGCGGca -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 41686 | 0.67 | 0.682541 |
Target: 5'- gCGUCAACccgaccCGGCGUcgcGGCGCCGa -3' miRNA: 3'- -GCAGUUGcaca--GCCGCAa--CUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 14170 | 0.67 | 0.681456 |
Target: 5'- aCGUCAugGUGcgcuugcUCuGCGccaccaUGACGCCGUc -3' miRNA: 3'- -GCAGUugCAC-------AGcCGCa-----ACUGCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 11706 | 0.67 | 0.682541 |
Target: 5'- cCGUCGACGcaGUcgaccCGGcCGUcGACGCCGa -3' miRNA: 3'- -GCAGUUGCa-CA-----GCC-GCAaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 40366 | 0.67 | 0.704129 |
Target: 5'- cCGUC-GCGg--CGGCGUUGGugaugaacuCGCCGUu -3' miRNA: 3'- -GCAGuUGCacaGCCGCAACU---------GCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 22692 | 0.67 | 0.714824 |
Target: 5'- uGUCGACGg--CGGCGcUGGCgGCCu- -3' miRNA: 3'- gCAGUUGCacaGCCGCaACUG-CGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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