miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 50860 1.07 0.001788
Target:  5'- gCGUCAACGUGUCGGCGUUGACGCCGUu -3'
miRNA:   3'- -GCAGUUGCACAGCCGCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 35635 0.78 0.194627
Target:  5'- uCGUCGAUaGUGUUgggGGCGUUGACGUCGa -3'
miRNA:   3'- -GCAGUUG-CACAG---CCGCAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 29565 0.77 0.210756
Target:  5'- gGUCGuagguAUGUGUCGGCG-UGACGUCGa -3'
miRNA:   3'- gCAGU-----UGCACAGCCGCaACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 11027 0.76 0.238949
Target:  5'- uCGUCGGCGccgcgacgccggGUCGG-GUUGACGCCGa -3'
miRNA:   3'- -GCAGUUGCa-----------CAGCCgCAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 19594 0.75 0.279245
Target:  5'- gCGUCGACGUGU-GGCaGUcguuccuUGACGCCGc -3'
miRNA:   3'- -GCAGUUGCACAgCCG-CA-------ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 49891 0.74 0.309257
Target:  5'- uCGUCGGCGUG-CGGcCGUUGACGaaaCGc -3'
miRNA:   3'- -GCAGUUGCACaGCC-GCAACUGCg--GCa -5'
12777 5' -54.7 NC_003387.1 + 30964 0.74 0.340847
Target:  5'- --aCAGCGcGUCGGUGgcgcUGACGCCGa -3'
miRNA:   3'- gcaGUUGCaCAGCCGCa---ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 32597 0.72 0.392469
Target:  5'- gGUUucgGUGUCGGUGUUGGUGCCGUc -3'
miRNA:   3'- gCAGuugCACAGCCGCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 9301 0.72 0.401554
Target:  5'- uCGUCGAacuUGcUGUCGGCGUUGACcuCCGa -3'
miRNA:   3'- -GCAGUU---GC-ACAGCCGCAACUGc-GGCa -5'
12777 5' -54.7 NC_003387.1 + 4825 0.71 0.448914
Target:  5'- uCGuUCGACGcgcuUGUCGGCGacgUGcACGCCGa -3'
miRNA:   3'- -GC-AGUUGC----ACAGCCGCa--AC-UGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 12888 0.71 0.478766
Target:  5'- gCGUCAACGUGagCGGCcucGACGgCGUg -3'
miRNA:   3'- -GCAGUUGCACa-GCCGcaaCUGCgGCA- -5'
12777 5' -54.7 NC_003387.1 + 49507 0.7 0.498168
Target:  5'- gCGUCGACGUGUCgcaauggGGCug-GACGUCGc -3'
miRNA:   3'- -GCAGUUGCACAG-------CCGcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 22976 0.7 0.4992
Target:  5'- gGUCAuCGUGUCGGgc--GGCGCCGa -3'
miRNA:   3'- gCAGUuGCACAGCCgcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 36134 0.7 0.509561
Target:  5'- uCGUaguaaAGCGUccCGGCGUUGcCGCCGUu -3'
miRNA:   3'- -GCAg----UUGCAcaGCCGCAACuGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 16713 0.7 0.509561
Target:  5'- aCGuUCGAccuCGUGaUCGGCGacGACGCCGa -3'
miRNA:   3'- -GC-AGUU---GCAC-AGCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 27517 0.7 0.530545
Target:  5'- aCGUCAgcaccaugauGCGcUGccgCGGCGgcGGCGCCGg -3'
miRNA:   3'- -GCAGU----------UGC-ACa--GCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 13649 0.7 0.541155
Target:  5'- cCGUCGGCGgcggcucgGUCGcCGagGGCGCCGUc -3'
miRNA:   3'- -GCAGUUGCa-------CAGCcGCaaCUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 47454 0.7 0.541155
Target:  5'- aCGUuuaCGGCGaGUCGGCuGUUGAguuCGCCGUc -3'
miRNA:   3'- -GCA---GUUGCaCAGCCG-CAACU---GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 19444 0.69 0.561502
Target:  5'- gCGUUAaggccgugcgggcGCGUGUCaGUGUgGGCGCCGa -3'
miRNA:   3'- -GCAGU-------------UGCACAGcCGCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 27022 0.69 0.573378
Target:  5'- aCGUCA---UGUCGGCGUUGGCcuucucGUCGUu -3'
miRNA:   3'- -GCAGUugcACAGCCGCAACUG------CGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.