miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 1465 0.66 0.766861
Target:  5'- uCGUCGAgGUcGUCgagggccagGGCGUcGACGUCGa -3'
miRNA:   3'- -GCAGUUgCA-CAG---------CCGCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 4129 0.66 0.733864
Target:  5'- gGUUAGCGgcgggcuuuuggGUCGGCGaggcgGGCGUCGa -3'
miRNA:   3'- gCAGUUGCa-----------CAGCCGCaa---CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 4825 0.71 0.448914
Target:  5'- uCGuUCGACGcgcuUGUCGGCGacgUGcACGCCGa -3'
miRNA:   3'- -GC-AGUUGC----ACAGCCGCa--AC-UGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 9301 0.72 0.401554
Target:  5'- uCGUCGAacuUGcUGUCGGCGUUGACcuCCGa -3'
miRNA:   3'- -GCAGUU---GC-ACAGCCGCAACUGc-GGCa -5'
12777 5' -54.7 NC_003387.1 + 9337 0.68 0.67167
Target:  5'- gGUCGACGUcGUCGaGCaccagGACGUCGa -3'
miRNA:   3'- gCAGUUGCA-CAGC-CGcaa--CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 10012 0.69 0.595111
Target:  5'- gGUCGGCGUugccgguaucgGUCGGCG-UGACGUUa- -3'
miRNA:   3'- gCAGUUGCA-----------CAGCCGCaACUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 11027 0.76 0.238949
Target:  5'- uCGUCGGCGccgcgacgccggGUCGG-GUUGACGCCGa -3'
miRNA:   3'- -GCAGUUGCa-----------CAGCCgCAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 11706 0.67 0.682541
Target:  5'- cCGUCGACGcaGUcgaccCGGcCGUcGACGCCGa -3'
miRNA:   3'- -GCAGUUGCa-CA-----GCC-GCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 12888 0.71 0.478766
Target:  5'- gCGUCAACGUGagCGGCcucGACGgCGUg -3'
miRNA:   3'- -GCAGUUGCACa-GCCGcaaCUGCgGCA- -5'
12777 5' -54.7 NC_003387.1 + 12935 0.69 0.599475
Target:  5'- uCGUCGGCGcucggcagugccacGUCGGCGUcUGGCgGCUGUa -3'
miRNA:   3'- -GCAGUUGCa-------------CAGCCGCA-ACUG-CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 13649 0.7 0.541155
Target:  5'- cCGUCGGCGgcggcucgGUCGcCGagGGCGCCGUc -3'
miRNA:   3'- -GCAGUUGCa-------CAGCcGCaaCUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 14170 0.67 0.681456
Target:  5'- aCGUCAugGUGcgcuugcUCuGCGccaccaUGACGCCGUc -3'
miRNA:   3'- -GCAGUugCAC-------AGcCGCa-----ACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 15177 0.66 0.746379
Target:  5'- cCGUCGGCGacgaucgCGGC-UUGAaCGCCGUu -3'
miRNA:   3'- -GCAGUUGCaca----GCCGcAACU-GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 16713 0.7 0.509561
Target:  5'- aCGuUCGAccuCGUGaUCGGCGacGACGCCGa -3'
miRNA:   3'- -GC-AGUU---GCAC-AGCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 17141 0.66 0.766861
Target:  5'- uGUCGACcaGcUCGGCcagGGCGCCGa -3'
miRNA:   3'- gCAGUUGcaC-AGCCGcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 19444 0.69 0.561502
Target:  5'- gCGUUAaggccgugcgggcGCGUGUCaGUGUgGGCGCCGa -3'
miRNA:   3'- -GCAGU-------------UGCACAGcCGCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 19594 0.75 0.279245
Target:  5'- gCGUCGACGUGU-GGCaGUcguuccuUGACGCCGc -3'
miRNA:   3'- -GCAGUUGCACAgCCG-CA-------ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 21798 0.67 0.714824
Target:  5'- cCG-CGGCGgccagcUCGGCGagcGACGCCGUg -3'
miRNA:   3'- -GCaGUUGCac----AGCCGCaa-CUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 22692 0.67 0.714824
Target:  5'- uGUCGACGg--CGGCGcUGGCgGCCu- -3'
miRNA:   3'- gCAGUUGCacaGCCGCaACUG-CGGca -5'
12777 5' -54.7 NC_003387.1 + 22976 0.7 0.4992
Target:  5'- gGUCAuCGUGUCGGgc--GGCGCCGa -3'
miRNA:   3'- gCAGUuGCACAGCCgcaaCUGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.