Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12777 | 5' | -54.7 | NC_003387.1 | + | 1465 | 0.66 | 0.766861 |
Target: 5'- uCGUCGAgGUcGUCgagggccagGGCGUcGACGUCGa -3' miRNA: 3'- -GCAGUUgCA-CAG---------CCGCAaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 4129 | 0.66 | 0.733864 |
Target: 5'- gGUUAGCGgcgggcuuuuggGUCGGCGaggcgGGCGUCGa -3' miRNA: 3'- gCAGUUGCa-----------CAGCCGCaa---CUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 4825 | 0.71 | 0.448914 |
Target: 5'- uCGuUCGACGcgcuUGUCGGCGacgUGcACGCCGa -3' miRNA: 3'- -GC-AGUUGC----ACAGCCGCa--AC-UGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 9301 | 0.72 | 0.401554 |
Target: 5'- uCGUCGAacuUGcUGUCGGCGUUGACcuCCGa -3' miRNA: 3'- -GCAGUU---GC-ACAGCCGCAACUGc-GGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 9337 | 0.68 | 0.67167 |
Target: 5'- gGUCGACGUcGUCGaGCaccagGACGUCGa -3' miRNA: 3'- gCAGUUGCA-CAGC-CGcaa--CUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 10012 | 0.69 | 0.595111 |
Target: 5'- gGUCGGCGUugccgguaucgGUCGGCG-UGACGUUa- -3' miRNA: 3'- gCAGUUGCA-----------CAGCCGCaACUGCGGca -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 11027 | 0.76 | 0.238949 |
Target: 5'- uCGUCGGCGccgcgacgccggGUCGG-GUUGACGCCGa -3' miRNA: 3'- -GCAGUUGCa-----------CAGCCgCAACUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 11706 | 0.67 | 0.682541 |
Target: 5'- cCGUCGACGcaGUcgaccCGGcCGUcGACGCCGa -3' miRNA: 3'- -GCAGUUGCa-CA-----GCC-GCAaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 12888 | 0.71 | 0.478766 |
Target: 5'- gCGUCAACGUGagCGGCcucGACGgCGUg -3' miRNA: 3'- -GCAGUUGCACa-GCCGcaaCUGCgGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 12935 | 0.69 | 0.599475 |
Target: 5'- uCGUCGGCGcucggcagugccacGUCGGCGUcUGGCgGCUGUa -3' miRNA: 3'- -GCAGUUGCa-------------CAGCCGCA-ACUG-CGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 13649 | 0.7 | 0.541155 |
Target: 5'- cCGUCGGCGgcggcucgGUCGcCGagGGCGCCGUc -3' miRNA: 3'- -GCAGUUGCa-------CAGCcGCaaCUGCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 14170 | 0.67 | 0.681456 |
Target: 5'- aCGUCAugGUGcgcuugcUCuGCGccaccaUGACGCCGUc -3' miRNA: 3'- -GCAGUugCAC-------AGcCGCa-----ACUGCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 15177 | 0.66 | 0.746379 |
Target: 5'- cCGUCGGCGacgaucgCGGC-UUGAaCGCCGUu -3' miRNA: 3'- -GCAGUUGCaca----GCCGcAACU-GCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 16713 | 0.7 | 0.509561 |
Target: 5'- aCGuUCGAccuCGUGaUCGGCGacGACGCCGa -3' miRNA: 3'- -GC-AGUU---GCAC-AGCCGCaaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 17141 | 0.66 | 0.766861 |
Target: 5'- uGUCGACcaGcUCGGCcagGGCGCCGa -3' miRNA: 3'- gCAGUUGcaC-AGCCGcaaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 19444 | 0.69 | 0.561502 |
Target: 5'- gCGUUAaggccgugcgggcGCGUGUCaGUGUgGGCGCCGa -3' miRNA: 3'- -GCAGU-------------UGCACAGcCGCAaCUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 19594 | 0.75 | 0.279245 |
Target: 5'- gCGUCGACGUGU-GGCaGUcguuccuUGACGCCGc -3' miRNA: 3'- -GCAGUUGCACAgCCG-CA-------ACUGCGGCa -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 21798 | 0.67 | 0.714824 |
Target: 5'- cCG-CGGCGgccagcUCGGCGagcGACGCCGUg -3' miRNA: 3'- -GCaGUUGCac----AGCCGCaa-CUGCGGCA- -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 22692 | 0.67 | 0.714824 |
Target: 5'- uGUCGACGg--CGGCGcUGGCgGCCu- -3' miRNA: 3'- gCAGUUGCacaGCCGCaACUG-CGGca -5' |
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12777 | 5' | -54.7 | NC_003387.1 | + | 22976 | 0.7 | 0.4992 |
Target: 5'- gGUCAuCGUGUCGGgc--GGCGCCGa -3' miRNA: 3'- gCAGUuGCACAGCCgcaaCUGCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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