miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 51301 0.67 0.714824
Target:  5'- uGcCAGCucGUCGGCGgcGGCGCCu- -3'
miRNA:   3'- gCaGUUGcaCAGCCGCaaCUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 50860 1.07 0.001788
Target:  5'- gCGUCAACGUGUCGGCGUUGACGCCGUu -3'
miRNA:   3'- -GCAGUUGCACAGCCGCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 49891 0.74 0.309257
Target:  5'- uCGUCGGCGUG-CGGcCGUUGACGaaaCGc -3'
miRNA:   3'- -GCAGUUGCACaGCC-GCAACUGCg--GCa -5'
12777 5' -54.7 NC_003387.1 + 49507 0.7 0.498168
Target:  5'- gCGUCGACGUGUCgcaauggGGCug-GACGUCGc -3'
miRNA:   3'- -GCAGUUGCACAG-------CCGcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 48052 0.68 0.638877
Target:  5'- uCGUCuugcuuGGCGgcGUCGGCcgcUUGGCGCCGg -3'
miRNA:   3'- -GCAG------UUGCa-CAGCCGc--AACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 47454 0.7 0.541155
Target:  5'- aCGUuuaCGGCGaGUCGGCuGUUGAguuCGCCGUc -3'
miRNA:   3'- -GCA---GUUGCaCAGCCG-CAACU---GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 45626 0.65 0.785811
Target:  5'- aGUCGGCGUacggcgaggcgaaGaUCGGCcgccUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCA-------------C-AGCCGca--ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 44028 0.68 0.649828
Target:  5'- uCGUCGACGUcgGUCGGCagcGGCguGCCGa -3'
miRNA:   3'- -GCAGUUGCA--CAGCCGcaaCUG--CGGCa -5'
12777 5' -54.7 NC_003387.1 + 43220 0.69 0.595111
Target:  5'- gGUCGugccGUCGGgguacuCGUUGACGCCGUa -3'
miRNA:   3'- gCAGUugcaCAGCC------GCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 42140 0.66 0.735961
Target:  5'- uGUgAACGUGgCGGCGgUGGCccGCUGUc -3'
miRNA:   3'- gCAgUUGCACaGCCGCaACUG--CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 41686 0.67 0.682541
Target:  5'- gCGUCAACccgaccCGGCGUcgcGGCGCCGa -3'
miRNA:   3'- -GCAGUUGcaca--GCCGCAa--CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 41442 0.66 0.776901
Target:  5'- gGUCAcCGgcgCGGCccUGACGCCGc -3'
miRNA:   3'- gCAGUuGCacaGCCGcaACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 41010 0.67 0.704129
Target:  5'- gCGUCGACGgccggGUCGacuGCGUcGACGgCGa -3'
miRNA:   3'- -GCAGUUGCa----CAGC---CGCAaCUGCgGCa -5'
12777 5' -54.7 NC_003387.1 + 40366 0.67 0.704129
Target:  5'- cCGUC-GCGg--CGGCGUUGGugaugaacuCGCCGUu -3'
miRNA:   3'- -GCAGuUGCacaGCCGCAACU---------GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 38448 0.69 0.584225
Target:  5'- aGUCGACGcGcUCGGgcUUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCaC-AGCCgcAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 36901 0.68 0.660762
Target:  5'- gCGUCGGCGUcacaacCGGCGgcGACGCgGc -3'
miRNA:   3'- -GCAGUUGCAca----GCCGCaaCUGCGgCa -5'
12777 5' -54.7 NC_003387.1 + 36134 0.7 0.509561
Target:  5'- uCGUaguaaAGCGUccCGGCGUUGcCGCCGUu -3'
miRNA:   3'- -GCAg----UUGCAcaGCCGCAACuGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 35635 0.78 0.194627
Target:  5'- uCGUCGAUaGUGUUgggGGCGUUGACGUCGa -3'
miRNA:   3'- -GCAGUUG-CACAG---CCGCAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 35415 0.67 0.725438
Target:  5'- gGUCAGCgGUGUgauUGGCGgauuCGCCGg -3'
miRNA:   3'- gCAGUUG-CACA---GCCGCaacuGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 32597 0.72 0.392469
Target:  5'- gGUUucgGUGUCGGUGUUGGUGCCGUc -3'
miRNA:   3'- gCAGuugCACAGCCGCAACUGCGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.