miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 29760 0.68 0.708776
Target:  5'- aCACgAUGacCGGGGCGCCccacGCgGUCAGCu -3'
miRNA:   3'- aGUG-UAU--GCUCCGCGGca--UG-CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 1157 0.68 0.697879
Target:  5'- -uGCAUGCGcGGUGCUuaGCGgCAGCg -3'
miRNA:   3'- agUGUAUGCuCCGCGGcaUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 29728 0.68 0.697879
Target:  5'- ---gAUGCG-GGCcuuGCCGU-CGUCGGCg -3'
miRNA:   3'- agugUAUGCuCCG---CGGCAuGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 37270 0.68 0.697879
Target:  5'- cCGCGUgGCGgucaAGGCGCCuGgcgcgcuCGUCGGCg -3'
miRNA:   3'- aGUGUA-UGC----UCCGCGG-Cau-----GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 45108 0.68 0.697879
Target:  5'- gCGCAU-CGGucacuuGGuCGCCGUGCGUcCAGUc -3'
miRNA:   3'- aGUGUAuGCU------CC-GCGGCAUGCA-GUCG- -5'
12778 5' -53.3 NC_003387.1 + 44386 0.68 0.697879
Target:  5'- gCACGU-CGGGGuCGUCG-AgGUCGGCc -3'
miRNA:   3'- aGUGUAuGCUCC-GCGGCaUgCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 29305 0.68 0.686915
Target:  5'- cCGCAaugACGcAGGCGCCGcgcuUGUCGGg -3'
miRNA:   3'- aGUGUa--UGC-UCCGCGGCau--GCAGUCg -5'
12778 5' -53.3 NC_003387.1 + 27111 0.68 0.685816
Target:  5'- -gGCGUauucACGAGGCacugcgggucgagGCCGUGCccgccgggGUCGGCg -3'
miRNA:   3'- agUGUA----UGCUCCG-------------CGGCAUG--------CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 22945 0.68 0.683615
Target:  5'- -gGCAUGCGGucaCGCCGUAgcugaucgucaugcCGUCGGCg -3'
miRNA:   3'- agUGUAUGCUcc-GCGGCAU--------------GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 32529 0.69 0.675899
Target:  5'- gCGCAUGCGuaguucacggcGGCGCCGUcCGgUGGCg -3'
miRNA:   3'- aGUGUAUGCu----------CCGCGGCAuGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 1401 0.69 0.675899
Target:  5'- gUCGCgcucgaaguuGUGCGAGGCGCCGccgccgACGagcUGGCa -3'
miRNA:   3'- -AGUG----------UAUGCUCCGCGGCa-----UGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 51359 0.69 0.669267
Target:  5'- gCGCcgacgGCGAGGUGCCGUggaGCGaggccgauuucggauUCGGCc -3'
miRNA:   3'- aGUGua---UGCUCCGCGGCA---UGC---------------AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15928 0.69 0.664839
Target:  5'- gCACGU-CGcGGUGgCGUgcGCGUCGGCc -3'
miRNA:   3'- aGUGUAuGCuCCGCgGCA--UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 30027 0.69 0.662624
Target:  5'- cUACGgGCGAGGCGCaCGUGCuacgaaacccgcUCGGCc -3'
miRNA:   3'- aGUGUaUGCUCCGCG-GCAUGc-----------AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 22096 0.69 0.653749
Target:  5'- cUCGCGcuugugcuUGCGcAGGuUGCCGUGCGUCGu- -3'
miRNA:   3'- -AGUGU--------AUGC-UCC-GCGGCAUGCAGUcg -5'
12778 5' -53.3 NC_003387.1 + 7291 0.69 0.653749
Target:  5'- uUCACGcccgGCGGuaacucgccGGgGCCGUACcuGUCGGCu -3'
miRNA:   3'- -AGUGUa---UGCU---------CCgCGGCAUG--CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 24661 0.69 0.642638
Target:  5'- gCGCAgcgagUACGAGGCgaGCCacuugguCGUCAGCu -3'
miRNA:   3'- aGUGU-----AUGCUCCG--CGGcau----GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 26020 0.69 0.642638
Target:  5'- cCGCGcACGAcGGCGUCG-ACGagCAGCg -3'
miRNA:   3'- aGUGUaUGCU-CCGCGGCaUGCa-GUCG- -5'
12778 5' -53.3 NC_003387.1 + 27028 0.69 0.642638
Target:  5'- -uGCAUuggguguucGCGAGGCGgCGgaagcAUGUCGGCu -3'
miRNA:   3'- agUGUA---------UGCUCCGCgGCa----UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 23414 0.69 0.631518
Target:  5'- -gACAaGCGcGGCGCC-UGCGUCAuuGCg -3'
miRNA:   3'- agUGUaUGCuCCGCGGcAUGCAGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.