miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 15638 0.67 0.76188
Target:  5'- gCGCAcgGCGAGGuCGaCC--AUGUCGGCg -3'
miRNA:   3'- aGUGUa-UGCUCC-GC-GGcaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 48381 0.67 0.76188
Target:  5'- gUCGCuUACGuuGCGCUGgUGCGccuucUCGGCg -3'
miRNA:   3'- -AGUGuAUGCucCGCGGC-AUGC-----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15386 0.67 0.760846
Target:  5'- gCGCAgcccgcgGCGGGG-GCuCGUccacggcACGUCGGCg -3'
miRNA:   3'- aGUGUa------UGCUCCgCG-GCA-------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 28432 0.67 0.758775
Target:  5'- aUCACGUGaucggcgcgcacgcCGAGGCGgCGgcagaucGCGgcgCAGCa -3'
miRNA:   3'- -AGUGUAU--------------GCUCCGCgGCa------UGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 12260 0.67 0.751483
Target:  5'- -gAUGUACuuGGCGCUGUACagcuUCGGCg -3'
miRNA:   3'- agUGUAUGcuCCGCGGCAUGc---AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 40564 0.67 0.751483
Target:  5'- -gGCGUuCGAGGCGCUGcagaaGC-UCGGCa -3'
miRNA:   3'- agUGUAuGCUCCGCGGCa----UGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 16925 0.67 0.740963
Target:  5'- -gACAacAUGGGGCGCCGcUACGacguUCGGUa -3'
miRNA:   3'- agUGUa-UGCUCCGCGGC-AUGC----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 32413 0.67 0.740963
Target:  5'- aCACGUACcGGaCGCCGUugACGUagCAGCc -3'
miRNA:   3'- aGUGUAUGcUCcGCGGCA--UGCA--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 32367 0.67 0.740963
Target:  5'- uUCAag-GCGAGGUuguaGuuGUACGUCgcaGGCg -3'
miRNA:   3'- -AGUguaUGCUCCG----CggCAUGCAG---UCG- -5'
12778 5' -53.3 NC_003387.1 + 7971 0.67 0.740963
Target:  5'- uUCACGgcggGCG-GGUGCUGcGCuUCGGCg -3'
miRNA:   3'- -AGUGUa---UGCuCCGCGGCaUGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 9728 0.67 0.740963
Target:  5'- gCGCGUACGGGuCGgCGUcaAgGUCGGCc -3'
miRNA:   3'- aGUGUAUGCUCcGCgGCA--UgCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 20048 0.67 0.736723
Target:  5'- -gACGUGCGcGGCGagguucagcucggCGUGCGUgAGCg -3'
miRNA:   3'- agUGUAUGCuCCGCg------------GCAUGCAgUCG- -5'
12778 5' -53.3 NC_003387.1 + 2920 0.68 0.73033
Target:  5'- cCGCGgGCGAGGCucucGUCGaacUGCGcCAGCa -3'
miRNA:   3'- aGUGUaUGCUCCG----CGGC---AUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 22977 0.68 0.73033
Target:  5'- gUCAuCGUGuCGGgcGGCGCCG-ACGaCGGCa -3'
miRNA:   3'- -AGU-GUAU-GCU--CCGCGGCaUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 6120 0.68 0.727121
Target:  5'- -gACAUGCGcggcagcggcuugaGGGCGCCacuGUGaggGUCGGCg -3'
miRNA:   3'- agUGUAUGC--------------UCCGCGG---CAUg--CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 32851 0.68 0.719598
Target:  5'- gCACGgugucuUGCaGGGCGCCcagcgccGCGUCGGCg -3'
miRNA:   3'- aGUGU------AUGcUCCGCGGca-----UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 26333 0.68 0.719598
Target:  5'- -aGCAuUGCG-GuaGCCG-ACGUCAGCa -3'
miRNA:   3'- agUGU-AUGCuCcgCGGCaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 4685 0.68 0.719598
Target:  5'- -aGCAagACGAGGUGCUGaaccuCGUCgAGCa -3'
miRNA:   3'- agUGUa-UGCUCCGCGGCau---GCAG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 984 0.68 0.708776
Target:  5'- cCGCcgcCGAGGCGCCGaccgGgGUCGGa -3'
miRNA:   3'- aGUGuauGCUCCGCGGCa---UgCAGUCg -5'
12778 5' -53.3 NC_003387.1 + 29760 0.68 0.708776
Target:  5'- aCACgAUGacCGGGGCGCCccacGCgGUCAGCu -3'
miRNA:   3'- aGUG-UAU--GCUCCGCGGca--UG-CAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.