Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12778 | 5' | -53.3 | NC_003387.1 | + | 37571 | 0.66 | 0.80199 |
Target: 5'- gCGCGU-CGAGGUaGgUGUACG-CGGCa -3' miRNA: 3'- aGUGUAuGCUCCG-CgGCAUGCaGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 16083 | 0.66 | 0.80199 |
Target: 5'- cCACucg-GGGGCGCCGU-CGggcaucgCGGCg -3' miRNA: 3'- aGUGuaugCUCCGCGGCAuGCa------GUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 46285 | 0.66 | 0.80199 |
Target: 5'- aCACGUGgGAGGCcgaGCag-GCGgcgCAGCg -3' miRNA: 3'- aGUGUAUgCUCCG---CGgcaUGCa--GUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 7832 | 0.66 | 0.792207 |
Target: 5'- -gAUAUGCGcgcccGGCGgC-UGCGUCAGCu -3' miRNA: 3'- agUGUAUGCu----CCGCgGcAUGCAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 26238 | 0.66 | 0.792207 |
Target: 5'- gUCGCcccgGCGAu-CGCCGUGCugaugGUCAGCa -3' miRNA: 3'- -AGUGua--UGCUccGCGGCAUG-----CAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 48935 | 0.66 | 0.788245 |
Target: 5'- gCGCGUucgugcucagcuuCGAGGCGCU--GCGUgAGCu -3' miRNA: 3'- aGUGUAu------------GCUCCGCGGcaUGCAgUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 45136 | 0.67 | 0.783256 |
Target: 5'- aCGCAUuuCGAGGCGCgGcgcucggagguggucGCGUgAGCa -3' miRNA: 3'- aGUGUAu-GCUCCGCGgCa--------------UGCAgUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 28877 | 0.67 | 0.782253 |
Target: 5'- cCGCGaGCGGcacGGCGCCGagucccgGCG-CGGCg -3' miRNA: 3'- aGUGUaUGCU---CCGCGGCa------UGCaGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 2272 | 0.67 | 0.782253 |
Target: 5'- gCGCcc-CGAGGUGCCcgaggGCGcCAGCg -3' miRNA: 3'- aGUGuauGCUCCGCGGca---UGCaGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 51202 | 0.67 | 0.782253 |
Target: 5'- -gGCAc-CGAGGUGCUGagccugcACGUCGGCc -3' miRNA: 3'- agUGUauGCUCCGCGGCa------UGCAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 49780 | 0.67 | 0.782253 |
Target: 5'- aUCACGcgcUGCGGguuGGCGCCGaaccgcgacACGaUCAGCc -3' miRNA: 3'- -AGUGU---AUGCU---CCGCGGCa--------UGC-AGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 42044 | 0.67 | 0.782253 |
Target: 5'- cCACcgcCGAGGCgGCCGUGguCG-CAGCc -3' miRNA: 3'- aGUGuauGCUCCG-CGGCAU--GCaGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 31306 | 0.67 | 0.782253 |
Target: 5'- -uGC-UGCGccGGGcCGCCGgggGCGUUGGCg -3' miRNA: 3'- agUGuAUGC--UCC-GCGGCa--UGCAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 19235 | 0.67 | 0.782253 |
Target: 5'- aUCACGcgaucGCG-GGCGCCGaccGCcUCGGCg -3' miRNA: 3'- -AGUGUa----UGCuCCGCGGCa--UGcAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 4179 | 0.67 | 0.782253 |
Target: 5'- gCACGUGaccucGGCGCgGUGCuUCGGCc -3' miRNA: 3'- aGUGUAUgcu--CCGCGgCAUGcAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 3623 | 0.67 | 0.781249 |
Target: 5'- gCGCGU-CGAGGUGCucgacuuCGUACGcCuGCg -3' miRNA: 3'- aGUGUAuGCUCCGCG-------GCAUGCaGuCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 23821 | 0.67 | 0.77214 |
Target: 5'- gCAgAUACGugaGGGCGCCGcGCcgggacUCGGCg -3' miRNA: 3'- aGUgUAUGC---UCCGCGGCaUGc-----AGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 9335 | 0.67 | 0.77214 |
Target: 5'- aCACGaccaGCcGGGCGCCGUGCa--GGCg -3' miRNA: 3'- aGUGUa---UGcUCCGCGGCAUGcagUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 20512 | 0.67 | 0.77214 |
Target: 5'- gCGCA-GCGcGGCGUCGcgcuCGUCGGUg -3' miRNA: 3'- aGUGUaUGCuCCGCGGCau--GCAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 36885 | 0.67 | 0.77214 |
Target: 5'- cUCGCcgACG-GGCaCC--GCGUCGGCg -3' miRNA: 3'- -AGUGuaUGCuCCGcGGcaUGCAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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