miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 44731 0.71 0.511255
Target:  5'- cUCGCccggcCGGGGCGCCGaaGCG-CAGCa -3'
miRNA:   3'- -AGUGuau--GCUCCGCGGCa-UGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 48007 0.71 0.511255
Target:  5'- gCACuucgACGAgucGGCGCCGUGgaUCGGCa -3'
miRNA:   3'- aGUGua--UGCU---CCGCGGCAUgcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 13666 0.71 0.520812
Target:  5'- gUCGC---CGAgGGCGCCGUcgacgcuAUGUCGGCg -3'
miRNA:   3'- -AGUGuauGCU-CCGCGGCA-------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 50363 0.71 0.521878
Target:  5'- cCGCGUACGuGGCGCuCG-ACGccgaCGGCg -3'
miRNA:   3'- aGUGUAUGCuCCGCG-GCaUGCa---GUCG- -5'
12778 5' -53.3 NC_003387.1 + 43519 0.71 0.532585
Target:  5'- -aGCGcGCGGGGUGCCGgucugugagGUGUCAGCu -3'
miRNA:   3'- agUGUaUGCUCCGCGGCa--------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 18691 0.71 0.532585
Target:  5'- aCACcgGggUGGGGCGCCGUGCcgaGGCa -3'
miRNA:   3'- aGUGuaU--GCUCCGCGGCAUGcagUCG- -5'
12778 5' -53.3 NC_003387.1 + 33026 0.71 0.54337
Target:  5'- uUCACGagcUGCGAGGCGUCGaACG--AGCc -3'
miRNA:   3'- -AGUGU---AUGCUCCGCGGCaUGCagUCG- -5'
12778 5' -53.3 NC_003387.1 + 44837 0.71 0.550962
Target:  5'- gCACgaGUGCGGccgaccucaaggucGGUGCCGUagccgucggggGCGUCGGCg -3'
miRNA:   3'- aGUG--UAUGCU--------------CCGCGGCA-----------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 50892 0.71 0.554226
Target:  5'- -aACGU-CGGGGCGUCG-ACGUCgagGGCa -3'
miRNA:   3'- agUGUAuGCUCCGCGGCaUGCAG---UCG- -5'
12778 5' -53.3 NC_003387.1 + 28483 0.71 0.554226
Target:  5'- uUCACAU---AGGCGUCGUauugcGCGUCAGg -3'
miRNA:   3'- -AGUGUAugcUCCGCGGCA-----UGCAGUCg -5'
12778 5' -53.3 NC_003387.1 + 30622 0.71 0.554226
Target:  5'- cCGCcgGgGAuGGCGCCGUACGUgcccCAcGCg -3'
miRNA:   3'- aGUGuaUgCU-CCGCGGCAUGCA----GU-CG- -5'
12778 5' -53.3 NC_003387.1 + 52244 0.7 0.565145
Target:  5'- aUCGCG-ACGAGcagcucGCGCCGgucgcCGUCGGCc -3'
miRNA:   3'- -AGUGUaUGCUC------CGCGGCau---GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15540 0.7 0.565145
Target:  5'- aCGCGcuCGGGGUGCCGggcCGcCAGCu -3'
miRNA:   3'- aGUGUauGCUCCGCGGCau-GCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 35691 0.7 0.565145
Target:  5'- gCACGUGUGGGG-GCCGUACGgcgacgaCGGCc -3'
miRNA:   3'- aGUGUAUGCUCCgCGGCAUGCa------GUCG- -5'
12778 5' -53.3 NC_003387.1 + 33886 0.7 0.576119
Target:  5'- gCACAUGCacauGGGCGgCGaccCGUCGGCg -3'
miRNA:   3'- aGUGUAUGc---UCCGCgGCau-GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 39307 0.7 0.576119
Target:  5'- uUCACAccgGCGA-GCGCCGacuuaacCGUCGGCc -3'
miRNA:   3'- -AGUGUa--UGCUcCGCGGCau-----GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 29842 0.7 0.584932
Target:  5'- -uGCuacACGAGGCGCCccugucgauuCGUCGGCg -3'
miRNA:   3'- agUGua-UGCUCCGCGGcau-------GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 33408 0.7 0.598199
Target:  5'- uUCACGcGCGAGGcCGuuGUGCGgcUguGCc -3'
miRNA:   3'- -AGUGUaUGCUCC-GCggCAUGC--AguCG- -5'
12778 5' -53.3 NC_003387.1 + 38510 0.7 0.609289
Target:  5'- -gGCGUGCGAGggcggcaagugaGCGCCGacgGCGUCAuggugGCg -3'
miRNA:   3'- agUGUAUGCUC------------CGCGGCa--UGCAGU-----CG- -5'
12778 5' -53.3 NC_003387.1 + 16965 0.69 0.620398
Target:  5'- gUCGCAaACGGGGUGCgCGUagAUGUUgcgGGCg -3'
miRNA:   3'- -AGUGUaUGCUCCGCG-GCA--UGCAG---UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.