miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 9728 0.67 0.740963
Target:  5'- gCGCGUACGGGuCGgCGUcaAgGUCGGCc -3'
miRNA:   3'- aGUGUAUGCUCcGCgGCA--UgCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 11410 0.69 0.631518
Target:  5'- cCGCGaucggcccCGAGGUGCUGU-CGUCGGUg -3'
miRNA:   3'- aGUGUau------GCUCCGCGGCAuGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 11451 0.66 0.839203
Target:  5'- gUCGCcguCGAGGgGgCGcACGgUCAGCg -3'
miRNA:   3'- -AGUGuauGCUCCgCgGCaUGC-AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 12260 0.67 0.751483
Target:  5'- -gAUGUACuuGGCGCUGUACagcuUCGGCg -3'
miRNA:   3'- agUGUAUGcuCCGCGGCAUGc---AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 12492 0.74 0.365488
Target:  5'- -uGCAUGCGGGGgcUGCCGUcgucccAgGUCAGCg -3'
miRNA:   3'- agUGUAUGCUCC--GCGGCA------UgCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 13666 0.71 0.520812
Target:  5'- gUCGC---CGAgGGCGCCGUcgacgcuAUGUCGGCg -3'
miRNA:   3'- -AGUGuauGCU-CCGCGGCA-------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15386 0.67 0.760846
Target:  5'- gCGCAgcccgcgGCGGGG-GCuCGUccacggcACGUCGGCg -3'
miRNA:   3'- aGUGUa------UGCUCCgCG-GCA-------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15540 0.7 0.565145
Target:  5'- aCGCGcuCGGGGUGCCGggcCGcCAGCu -3'
miRNA:   3'- aGUGUauGCUCCGCGGCau-GCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15638 0.67 0.76188
Target:  5'- gCGCAcgGCGAGGuCGaCC--AUGUCGGCg -3'
miRNA:   3'- aGUGUa-UGCUCC-GC-GGcaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15837 0.68 0.708776
Target:  5'- aCGCcgACGcGGUGCC---CGUCGGCg -3'
miRNA:   3'- aGUGuaUGCuCCGCGGcauGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15928 0.69 0.664839
Target:  5'- gCACGU-CGcGGUGgCGUgcGCGUCGGCc -3'
miRNA:   3'- aGUGUAuGCuCCGCgGCA--UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 16083 0.66 0.80199
Target:  5'- cCACucg-GGGGCGCCGU-CGggcaucgCGGCg -3'
miRNA:   3'- aGUGuaugCUCCGCGGCAuGCa------GUCG- -5'
12778 5' -53.3 NC_003387.1 + 16925 0.67 0.740963
Target:  5'- -gACAacAUGGGGCGCCGcUACGacguUCGGUa -3'
miRNA:   3'- agUGUa-UGCUCCGCGGC-AUGC----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 16965 0.69 0.620398
Target:  5'- gUCGCAaACGGGGUGCgCGUagAUGUUgcgGGCg -3'
miRNA:   3'- -AGUGUaUGCUCCGCG-GCA--UGCAG---UCG- -5'
12778 5' -53.3 NC_003387.1 + 17317 0.66 0.821002
Target:  5'- aUCACAccgcugaccUGCGGuGGCGCuucugCGUGCcgcaagGUCGGCa -3'
miRNA:   3'- -AGUGU---------AUGCU-CCGCG-----GCAUG------CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 18110 0.75 0.331745
Target:  5'- gCGCAggauuaUGCGuGGaCGCCGUACGUCAccggGCa -3'
miRNA:   3'- aGUGU------AUGCuCC-GCGGCAUGCAGU----CG- -5'
12778 5' -53.3 NC_003387.1 + 18691 0.71 0.532585
Target:  5'- aCACcgGggUGGGGCGCCGUGCcgaGGCa -3'
miRNA:   3'- aGUGuaU--GCUCCGCGGCAUGcagUCG- -5'
12778 5' -53.3 NC_003387.1 + 19235 0.67 0.782253
Target:  5'- aUCACGcgaucGCG-GGCGCCGaccGCcUCGGCg -3'
miRNA:   3'- -AGUGUa----UGCuCCGCGGCa--UGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 20048 0.67 0.736723
Target:  5'- -gACGUGCGcGGCGagguucagcucggCGUGCGUgAGCg -3'
miRNA:   3'- agUGUAUGCuCCGCg------------GCAUGCAgUCG- -5'
12778 5' -53.3 NC_003387.1 + 20512 0.67 0.77214
Target:  5'- gCGCA-GCGcGGCGUCGcgcuCGUCGGUg -3'
miRNA:   3'- aGUGUaUGCuCCGCGGCau--GCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.