miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 984 0.68 0.708776
Target:  5'- cCGCcgcCGAGGCGCCGaccgGgGUCGGa -3'
miRNA:   3'- aGUGuauGCUCCGCGGCa---UgCAGUCg -5'
12778 5' -53.3 NC_003387.1 + 1112 0.66 0.80199
Target:  5'- gUCACAUgaGCGAcgcuagGGCGCacgguGUGC-UCGGCg -3'
miRNA:   3'- -AGUGUA--UGCU------CCGCGg----CAUGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 1157 0.68 0.697879
Target:  5'- -uGCAUGCGcGGUGCUuaGCGgCAGCg -3'
miRNA:   3'- agUGUAUGCuCCGCGGcaUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 1401 0.69 0.675899
Target:  5'- gUCGCgcucgaaguuGUGCGAGGCGCCGccgccgACGagcUGGCa -3'
miRNA:   3'- -AGUG----------UAUGCUCCGCGGCa-----UGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 2272 0.67 0.782253
Target:  5'- gCGCcc-CGAGGUGCCcgaggGCGcCAGCg -3'
miRNA:   3'- aGUGuauGCUCCGCGGca---UGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 2340 0.73 0.420375
Target:  5'- -gGCGguguCGAGGcCGCCGUcgGCGUCgAGCg -3'
miRNA:   3'- agUGUau--GCUCC-GCGGCA--UGCAG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 2920 0.68 0.73033
Target:  5'- cCGCGgGCGAGGCucucGUCGaacUGCGcCAGCa -3'
miRNA:   3'- aGUGUaUGCUCCG----CGGC---AUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 3623 0.67 0.781249
Target:  5'- gCGCGU-CGAGGUGCucgacuuCGUACGcCuGCg -3'
miRNA:   3'- aGUGUAuGCUCCGCG-------GCAUGCaGuCG- -5'
12778 5' -53.3 NC_003387.1 + 3873 0.66 0.830208
Target:  5'- gCGCAccaggGCGuGcaCGCCGUGCGUCGcGCc -3'
miRNA:   3'- aGUGUa----UGCuCc-GCGGCAUGCAGU-CG- -5'
12778 5' -53.3 NC_003387.1 + 4089 0.73 0.429997
Target:  5'- cCGCAUgcucGCGAcccgcGGCGCCGUGuacaaGUCGGCc -3'
miRNA:   3'- aGUGUA----UGCU-----CCGCGGCAUg----CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 4179 0.67 0.782253
Target:  5'- gCACGUGaccucGGCGCgGUGCuUCGGCc -3'
miRNA:   3'- aGUGUAUgcu--CCGCGgCAUGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 4685 0.68 0.719598
Target:  5'- -aGCAagACGAGGUGCUGaaccuCGUCgAGCa -3'
miRNA:   3'- agUGUa-UGCUCCGCGGCau---GCAG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 4703 0.66 0.839203
Target:  5'- gCACGUGcCGAuccacGGCGCCGacuCGUCgaAGUg -3'
miRNA:   3'- aGUGUAU-GCU-----CCGCGGCau-GCAG--UCG- -5'
12778 5' -53.3 NC_003387.1 + 6120 0.68 0.727121
Target:  5'- -gACAUGCGcggcagcggcuugaGGGCGCCacuGUGaggGUCGGCg -3'
miRNA:   3'- agUGUAUGC--------------UCCGCGG---CAUg--CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 6987 0.66 0.839203
Target:  5'- cCACuuGUGC-AGGCGCCGcagaAUGUCGcGCa -3'
miRNA:   3'- aGUG--UAUGcUCCGCGGCa---UGCAGU-CG- -5'
12778 5' -53.3 NC_003387.1 + 7291 0.69 0.653749
Target:  5'- uUCACGcccgGCGGuaacucgccGGgGCCGUACcuGUCGGCu -3'
miRNA:   3'- -AGUGUa---UGCU---------CCgCGGCAUG--CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 7832 0.66 0.792207
Target:  5'- -gAUAUGCGcgcccGGCGgC-UGCGUCAGCu -3'
miRNA:   3'- agUGUAUGCu----CCGCgGcAUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 7971 0.67 0.740963
Target:  5'- uUCACGgcggGCG-GGUGCUGcGCuUCGGCg -3'
miRNA:   3'- -AGUGUa---UGCuCCGCGGCaUGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 8762 0.75 0.307976
Target:  5'- uUCGcCAUGCGGGccuuCGCCGUGCGgCGGCg -3'
miRNA:   3'- -AGU-GUAUGCUCc---GCGGCAUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 9335 0.67 0.77214
Target:  5'- aCACGaccaGCcGGGCGCCGUGCa--GGCg -3'
miRNA:   3'- aGUGUa---UGcUCCGCGGCAUGcagUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.