miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 52244 0.7 0.565145
Target:  5'- aUCGCG-ACGAGcagcucGCGCCGgucgcCGUCGGCc -3'
miRNA:   3'- -AGUGUaUGCUC------CGCGGCau---GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 51823 0.66 0.811592
Target:  5'- gCACAgcgcgaacACGAGcGCGCCGagcaggUACGUCuuGCc -3'
miRNA:   3'- aGUGUa-------UGCUC-CGCGGC------AUGCAGu-CG- -5'
12778 5' -53.3 NC_003387.1 + 51581 0.66 0.821002
Target:  5'- gCGCAUgcACGcAGGCGCCGagcacaccgUGCGcccUAGCg -3'
miRNA:   3'- aGUGUA--UGC-UCCGCGGC---------AUGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 51359 0.69 0.669267
Target:  5'- gCGCcgacgGCGAGGUGCCGUggaGCGaggccgauuucggauUCGGCc -3'
miRNA:   3'- aGUGua---UGCUCCGCGGCA---UGC---------------AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 51202 0.67 0.782253
Target:  5'- -gGCAc-CGAGGUGCUGagccugcACGUCGGCc -3'
miRNA:   3'- agUGUauGCUCCGCGGCa------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 50892 0.71 0.554226
Target:  5'- -aACGU-CGGGGCGUCG-ACGUCgagGGCa -3'
miRNA:   3'- agUGUAuGCUCCGCGGCaUGCAG---UCG- -5'
12778 5' -53.3 NC_003387.1 + 50461 0.66 0.80199
Target:  5'- gCACcu-CGGGGCGCCc-ACG-CAGCc -3'
miRNA:   3'- aGUGuauGCUCCGCGGcaUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 50363 0.71 0.521878
Target:  5'- cCGCGUACGuGGCGCuCG-ACGccgaCGGCg -3'
miRNA:   3'- aGUGUAUGCuCCGCG-GCaUGCa---GUCG- -5'
12778 5' -53.3 NC_003387.1 + 50235 1.13 0.00082
Target:  5'- gUCACAUACGAGGCGCCGUACGUCAGCg -3'
miRNA:   3'- -AGUGUAUGCUCCGCGGCAUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 49943 0.66 0.839203
Target:  5'- cUCGa--ACGucGCGCCGUgcucgaucACGUCGGUg -3'
miRNA:   3'- -AGUguaUGCucCGCGGCA--------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 49780 0.67 0.782253
Target:  5'- aUCACGcgcUGCGGguuGGCGCCGaaccgcgacACGaUCAGCc -3'
miRNA:   3'- -AGUGU---AUGCU---CCGCGGCa--------UGC-AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 49000 0.74 0.364616
Target:  5'- aCAgGUACGGGucgaucaGCGCCGgauagGCGUCGGUg -3'
miRNA:   3'- aGUgUAUGCUC-------CGCGGCa----UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 48935 0.66 0.788245
Target:  5'- gCGCGUucgugcucagcuuCGAGGCGCU--GCGUgAGCu -3'
miRNA:   3'- aGUGUAu------------GCUCCGCGGcaUGCAgUCG- -5'
12778 5' -53.3 NC_003387.1 + 48381 0.67 0.76188
Target:  5'- gUCGCuUACGuuGCGCUGgUGCGccuucUCGGCg -3'
miRNA:   3'- -AGUGuAUGCucCGCGGC-AUGC-----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 48007 0.71 0.511255
Target:  5'- gCACuucgACGAgucGGCGCCGUGgaUCGGCa -3'
miRNA:   3'- aGUGua--UGCU---CCGCGGCAUgcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 46285 0.66 0.80199
Target:  5'- aCACGUGgGAGGCcgaGCag-GCGgcgCAGCg -3'
miRNA:   3'- aGUGUAUgCUCCG---CGgcaUGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 45962 0.72 0.500723
Target:  5'- gCGCAaggGCGAGGCGUgcgcugugggccUGUAUGUCgAGCg -3'
miRNA:   3'- aGUGUa--UGCUCCGCG------------GCAUGCAG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 45136 0.67 0.783256
Target:  5'- aCGCAUuuCGAGGCGCgGcgcucggagguggucGCGUgAGCa -3'
miRNA:   3'- aGUGUAu-GCUCCGCGgCa--------------UGCAgUCG- -5'
12778 5' -53.3 NC_003387.1 + 45108 0.68 0.697879
Target:  5'- gCGCAU-CGGucacuuGGuCGCCGUGCGUcCAGUc -3'
miRNA:   3'- aGUGUAuGCU------CC-GCGGCAUGCA-GUCG- -5'
12778 5' -53.3 NC_003387.1 + 44837 0.71 0.550962
Target:  5'- gCACgaGUGCGGccgaccucaaggucGGUGCCGUagccgucggggGCGUCGGCg -3'
miRNA:   3'- aGUG--UAUGCU--------------CCGCGGCA-----------UGCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.