miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 21743 0.78 0.232015
Target:  5'- gUCGC---CGAGGCGCUcgGCGUCAGCg -3'
miRNA:   3'- -AGUGuauGCUCCGCGGcaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 33408 0.7 0.598199
Target:  5'- uUCACGcGCGAGGcCGuuGUGCGgcUguGCc -3'
miRNA:   3'- -AGUGUaUGCUCC-GCggCAUGC--AguCG- -5'
12778 5' -53.3 NC_003387.1 + 23414 0.69 0.631518
Target:  5'- -gACAaGCGcGGCGCC-UGCGUCAuuGCg -3'
miRNA:   3'- agUGUaUGCuCCGCGGcAUGCAGU--CG- -5'
12778 5' -53.3 NC_003387.1 + 26064 0.66 0.839203
Target:  5'- cCACAUucGCGAGGCugcGCCcgGCGUgacguauuucCAGCa -3'
miRNA:   3'- aGUGUA--UGCUCCG---CGGcaUGCA----------GUCG- -5'
12778 5' -53.3 NC_003387.1 + 44446 0.72 0.449622
Target:  5'- aCGCGcACGAGGCGCUGcGCGa-GGCg -3'
miRNA:   3'- aGUGUaUGCUCCGCGGCaUGCagUCG- -5'
12778 5' -53.3 NC_003387.1 + 40367 0.72 0.479956
Target:  5'- aUCGCGgcCGGGGCcaaggGCCucgACGUCGGCg -3'
miRNA:   3'- -AGUGUauGCUCCG-----CGGca-UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 45962 0.72 0.500723
Target:  5'- gCGCAaggGCGAGGCGUgcgcugugggccUGUAUGUCgAGCg -3'
miRNA:   3'- aGUGUa--UGCUCCGCG------------GCAUGCAG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 48007 0.71 0.511255
Target:  5'- gCACuucgACGAgucGGCGCCGUGgaUCGGCa -3'
miRNA:   3'- aGUGua--UGCU---CCGCGGCAUgcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 50363 0.71 0.521878
Target:  5'- cCGCGUACGuGGCGCuCG-ACGccgaCGGCg -3'
miRNA:   3'- aGUGUAUGCuCCGCG-GCaUGCa---GUCG- -5'
12778 5' -53.3 NC_003387.1 + 29842 0.7 0.584932
Target:  5'- -uGCuacACGAGGCGCCccugucgauuCGUCGGCg -3'
miRNA:   3'- agUGua-UGCUCCGCGGcau-------GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 50892 0.71 0.554226
Target:  5'- -aACGU-CGGGGCGUCG-ACGUCgagGGCa -3'
miRNA:   3'- agUGUAuGCUCCGCGGCaUGCAG---UCG- -5'
12778 5' -53.3 NC_003387.1 + 13666 0.71 0.520812
Target:  5'- gUCGC---CGAgGGCGCCGUcgacgcuAUGUCGGCg -3'
miRNA:   3'- -AGUGuauGCU-CCGCGGCA-------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 21622 0.76 0.271297
Target:  5'- gCACAUGauCGggcAGGCGUCGaGCGUCAGCu -3'
miRNA:   3'- aGUGUAU--GC---UCCGCGGCaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 35691 0.7 0.565145
Target:  5'- gCACGUGUGGGG-GCCGUACGgcgacgaCGGCc -3'
miRNA:   3'- aGUGUAUGCUCCgCGGCAUGCa------GUCG- -5'
12778 5' -53.3 NC_003387.1 + 18110 0.75 0.331745
Target:  5'- gCGCAggauuaUGCGuGGaCGCCGUACGUCAccggGCa -3'
miRNA:   3'- aGUGU------AUGCuCC-GCGGCAUGCAGU----CG- -5'
12778 5' -53.3 NC_003387.1 + 44731 0.71 0.511255
Target:  5'- cUCGCccggcCGGGGCGCCGaaGCG-CAGCa -3'
miRNA:   3'- -AGUGuau--GCUCCGCGGCa-UGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 33886 0.7 0.576119
Target:  5'- gCACAUGCacauGGGCGgCGaccCGUCGGCg -3'
miRNA:   3'- aGUGUAUGc---UCCGCgGCau-GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 38510 0.7 0.609289
Target:  5'- -gGCGUGCGAGggcggcaagugaGCGCCGacgGCGUCAuggugGCg -3'
miRNA:   3'- agUGUAUGCUC------------CGCGGCa--UGCAGU-----CG- -5'
12778 5' -53.3 NC_003387.1 + 4089 0.73 0.429997
Target:  5'- cCGCAUgcucGCGAcccgcGGCGCCGUGuacaaGUCGGCc -3'
miRNA:   3'- aGUGUA----UGCU-----CCGCGGCAUg----CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 39387 0.72 0.490288
Target:  5'- ---uGUACGAGGUGCuCGUGCGcCuGGCg -3'
miRNA:   3'- agugUAUGCUCCGCG-GCAUGCaG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.