Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12778 | 5' | -53.3 | NC_003387.1 | + | 23821 | 0.67 | 0.77214 |
Target: 5'- gCAgAUACGugaGGGCGCCGcGCcgggacUCGGCg -3' miRNA: 3'- aGUgUAUGC---UCCGCGGCaUGc-----AGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 50461 | 0.66 | 0.80199 |
Target: 5'- gCACcu-CGGGGCGCCc-ACG-CAGCc -3' miRNA: 3'- aGUGuauGCUCCGCGGcaUGCaGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 7832 | 0.66 | 0.792207 |
Target: 5'- -gAUAUGCGcgcccGGCGgC-UGCGUCAGCu -3' miRNA: 3'- agUGUAUGCu----CCGCgGcAUGCAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 49780 | 0.67 | 0.782253 |
Target: 5'- aUCACGcgcUGCGGguuGGCGCCGaaccgcgacACGaUCAGCc -3' miRNA: 3'- -AGUGU---AUGCU---CCGCGGCa--------UGC-AGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 19235 | 0.67 | 0.782253 |
Target: 5'- aUCACGcgaucGCG-GGCGCCGaccGCcUCGGCg -3' miRNA: 3'- -AGUGUa----UGCuCCGCGGCa--UGcAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 42044 | 0.67 | 0.782253 |
Target: 5'- cCACcgcCGAGGCgGCCGUGguCG-CAGCc -3' miRNA: 3'- aGUGuauGCUCCG-CGGCAU--GCaGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 31306 | 0.67 | 0.782253 |
Target: 5'- -uGC-UGCGccGGGcCGCCGgggGCGUUGGCg -3' miRNA: 3'- agUGuAUGC--UCC-GCGGCa--UGCAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 4179 | 0.67 | 0.782253 |
Target: 5'- gCACGUGaccucGGCGCgGUGCuUCGGCc -3' miRNA: 3'- aGUGUAUgcu--CCGCGgCAUGcAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 3623 | 0.67 | 0.781249 |
Target: 5'- gCGCGU-CGAGGUGCucgacuuCGUACGcCuGCg -3' miRNA: 3'- aGUGUAuGCUCCGCG-------GCAUGCaGuCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 1112 | 0.66 | 0.80199 |
Target: 5'- gUCACAUgaGCGAcgcuagGGCGCacgguGUGC-UCGGCg -3' miRNA: 3'- -AGUGUA--UGCU------CCGCGg----CAUGcAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 16083 | 0.66 | 0.80199 |
Target: 5'- cCACucg-GGGGCGCCGU-CGggcaucgCGGCg -3' miRNA: 3'- aGUGuaugCUCCGCGGCAuGCa------GUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 37571 | 0.66 | 0.80199 |
Target: 5'- gCGCGU-CGAGGUaGgUGUACG-CGGCa -3' miRNA: 3'- aGUGUAuGCUCCG-CgGCAUGCaGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 26121 | 0.66 | 0.839203 |
Target: 5'- uUCGCcgcCGAGGCGuuGUcagcACGagcCAGCa -3' miRNA: 3'- -AGUGuauGCUCCGCggCA----UGCa--GUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 6987 | 0.66 | 0.839203 |
Target: 5'- cCACuuGUGC-AGGCGCCGcagaAUGUCGcGCa -3' miRNA: 3'- aGUG--UAUGcUCCGCGGCa---UGCAGU-CG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 4703 | 0.66 | 0.839203 |
Target: 5'- gCACGUGcCGAuccacGGCGCCGacuCGUCgaAGUg -3' miRNA: 3'- aGUGUAU-GCU-----CCGCGGCau-GCAG--UCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 11451 | 0.66 | 0.839203 |
Target: 5'- gUCGCcguCGAGGgGgCGcACGgUCAGCg -3' miRNA: 3'- -AGUGuauGCUCCgCgGCaUGC-AGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 23689 | 0.66 | 0.838313 |
Target: 5'- -gGCGUGagccgaGGGGCGCUGUuugcugacuucggACGggcgCAGCg -3' miRNA: 3'- agUGUAUg-----CUCCGCGGCA-------------UGCa---GUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 22991 | 0.66 | 0.830208 |
Target: 5'- cUCGCccGCGuAGcUGCCGU-CGUCGGCc -3' miRNA: 3'- -AGUGuaUGC-UCcGCGGCAuGCAGUCG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 3873 | 0.66 | 0.830208 |
Target: 5'- gCGCAccaggGCGuGcaCGCCGUGCGUCGcGCc -3' miRNA: 3'- aGUGUa----UGCuCc-GCGGCAUGCAGU-CG- -5' |
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12778 | 5' | -53.3 | NC_003387.1 | + | 51823 | 0.66 | 0.811592 |
Target: 5'- gCACAgcgcgaacACGAGcGCGCCGagcaggUACGUCuuGCc -3' miRNA: 3'- aGUGUa-------UGCUC-CGCGGC------AUGCAGu-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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