miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 50235 1.13 0.00082
Target:  5'- gUCACAUACGAGGCGCCGUACGUCAGCg -3'
miRNA:   3'- -AGUGUAUGCUCCGCGGCAUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 27491 0.82 0.113331
Target:  5'- cCACAUGucggcCGAGGUGCCGcuaaACGUCAGCa -3'
miRNA:   3'- aGUGUAU-----GCUCCGCGGCa---UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 21743 0.78 0.232015
Target:  5'- gUCGC---CGAGGCGCUcgGCGUCAGCg -3'
miRNA:   3'- -AGUGuauGCUCCGCGGcaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 21622 0.76 0.271297
Target:  5'- gCACAUGauCGggcAGGCGUCGaGCGUCAGCu -3'
miRNA:   3'- aGUGUAU--GC---UCCGCGGCaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 8762 0.75 0.307976
Target:  5'- uUCGcCAUGCGGGccuuCGCCGUGCGgCGGCg -3'
miRNA:   3'- -AGU-GUAUGCUCc---GCGGCAUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 22270 0.75 0.323675
Target:  5'- gCACA-GCaGGGCGCCGUGC-UCGGCc -3'
miRNA:   3'- aGUGUaUGcUCCGCGGCAUGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 18110 0.75 0.331745
Target:  5'- gCGCAggauuaUGCGuGGaCGCCGUACGUCAccggGCa -3'
miRNA:   3'- aGUGU------AUGCuCC-GCGGCAUGCAGU----CG- -5'
12778 5' -53.3 NC_003387.1 + 49000 0.74 0.364616
Target:  5'- aCAgGUACGGGucgaucaGCGCCGgauagGCGUCGGUg -3'
miRNA:   3'- aGUgUAUGCUC-------CGCGGCa----UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 12492 0.74 0.365488
Target:  5'- -uGCAUGCGGGGgcUGCCGUcgucccAgGUCAGCg -3'
miRNA:   3'- agUGUAUGCUCC--GCGGCA------UgCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 28332 0.74 0.392307
Target:  5'- -gGCGU-CGAuGCGCCGcugUACGUCGGCg -3'
miRNA:   3'- agUGUAuGCUcCGCGGC---AUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 2340 0.73 0.420375
Target:  5'- -gGCGguguCGAGGcCGCCGUcgGCGUCgAGCg -3'
miRNA:   3'- agUGUau--GCUCC-GCGGCA--UGCAG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 4089 0.73 0.429997
Target:  5'- cCGCAUgcucGCGAcccgcGGCGCCGUGuacaaGUCGGCc -3'
miRNA:   3'- aGUGUA----UGCU-----CCGCGGCAUg----CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 44446 0.72 0.449622
Target:  5'- aCGCGcACGAGGCGCUGcGCGa-GGCg -3'
miRNA:   3'- aGUGUaUGCUCCGCGGCaUGCagUCG- -5'
12778 5' -53.3 NC_003387.1 + 31032 0.72 0.46973
Target:  5'- gCGCucgcCGAGGCgGCCaggGCGUCGGCg -3'
miRNA:   3'- aGUGuau-GCUCCG-CGGca-UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 44261 0.72 0.479956
Target:  5'- aUCGC-UGCGgaauuGGGCGCCGccgcAgGUCAGCg -3'
miRNA:   3'- -AGUGuAUGC-----UCCGCGGCa---UgCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 40367 0.72 0.479956
Target:  5'- aUCGCGgcCGGGGCcaaggGCCucgACGUCGGCg -3'
miRNA:   3'- -AGUGUauGCUCCG-----CGGca-UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 39387 0.72 0.490288
Target:  5'- ---uGUACGAGGUGCuCGUGCGcCuGGCg -3'
miRNA:   3'- agugUAUGCUCCGCG-GCAUGCaG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 34524 0.72 0.500723
Target:  5'- gUCGCGUcgcCGAGGCgcaccucgcaGCCGauCGUCAGCg -3'
miRNA:   3'- -AGUGUAu--GCUCCG----------CGGCauGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 43781 0.72 0.500723
Target:  5'- --uCAUGCG-GGCGCCGUGCaucgCGGUg -3'
miRNA:   3'- aguGUAUGCuCCGCGGCAUGca--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 45962 0.72 0.500723
Target:  5'- gCGCAaggGCGAGGCGUgcgcugugggccUGUAUGUCgAGCg -3'
miRNA:   3'- aGUGUa--UGCUCCGCG------------GCAUGCAG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.