miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 7291 0.69 0.653749
Target:  5'- uUCACGcccgGCGGuaacucgccGGgGCCGUACcuGUCGGCu -3'
miRNA:   3'- -AGUGUa---UGCU---------CCgCGGCAUG--CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 23414 0.69 0.631518
Target:  5'- -gACAaGCGcGGCGCC-UGCGUCAuuGCg -3'
miRNA:   3'- agUGUaUGCuCCGCGGcAUGCAGU--CG- -5'
12778 5' -53.3 NC_003387.1 + 13666 0.71 0.520812
Target:  5'- gUCGC---CGAgGGCGCCGUcgacgcuAUGUCGGCg -3'
miRNA:   3'- -AGUGuauGCU-CCGCGGCA-------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 4089 0.73 0.429997
Target:  5'- cCGCAUgcucGCGAcccgcGGCGCCGUGuacaaGUCGGCc -3'
miRNA:   3'- aGUGUA----UGCU-----CCGCGGCAUg----CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 48935 0.66 0.788245
Target:  5'- gCGCGUucgugcucagcuuCGAGGCGCU--GCGUgAGCu -3'
miRNA:   3'- aGUGUAu------------GCUCCGCGGcaUGCAgUCG- -5'
12778 5' -53.3 NC_003387.1 + 16925 0.67 0.740963
Target:  5'- -gACAacAUGGGGCGCCGcUACGacguUCGGUa -3'
miRNA:   3'- agUGUa-UGCUCCGCGGC-AUGC----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 33408 0.7 0.598199
Target:  5'- uUCACGcGCGAGGcCGuuGUGCGgcUguGCc -3'
miRNA:   3'- -AGUGUaUGCUCC-GCggCAUGC--AguCG- -5'
12778 5' -53.3 NC_003387.1 + 18110 0.75 0.331745
Target:  5'- gCGCAggauuaUGCGuGGaCGCCGUACGUCAccggGCa -3'
miRNA:   3'- aGUGU------AUGCuCC-GCGGCAUGCAGU----CG- -5'
12778 5' -53.3 NC_003387.1 + 22977 0.68 0.73033
Target:  5'- gUCAuCGUGuCGGgcGGCGCCG-ACGaCGGCa -3'
miRNA:   3'- -AGU-GUAU-GCU--CCGCGGCaUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 21622 0.76 0.271297
Target:  5'- gCACAUGauCGggcAGGCGUCGaGCGUCAGCu -3'
miRNA:   3'- aGUGUAU--GC---UCCGCGGCaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 38510 0.7 0.609289
Target:  5'- -gGCGUGCGAGggcggcaagugaGCGCCGacgGCGUCAuggugGCg -3'
miRNA:   3'- agUGUAUGCUC------------CGCGGCa--UGCAGU-----CG- -5'
12778 5' -53.3 NC_003387.1 + 51359 0.69 0.669267
Target:  5'- gCGCcgacgGCGAGGUGCCGUggaGCGaggccgauuucggauUCGGCc -3'
miRNA:   3'- aGUGua---UGCUCCGCGGCA---UGC---------------AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 35691 0.7 0.565145
Target:  5'- gCACGUGUGGGG-GCCGUACGgcgacgaCGGCc -3'
miRNA:   3'- aGUGUAUGCUCCgCGGCAUGCa------GUCG- -5'
12778 5' -53.3 NC_003387.1 + 50363 0.71 0.521878
Target:  5'- cCGCGUACGuGGCGCuCG-ACGccgaCGGCg -3'
miRNA:   3'- aGUGUAUGCuCCGCG-GCaUGCa---GUCG- -5'
12778 5' -53.3 NC_003387.1 + 45962 0.72 0.500723
Target:  5'- gCGCAaggGCGAGGCGUgcgcugugggccUGUAUGUCgAGCg -3'
miRNA:   3'- aGUGUa--UGCUCCGCG------------GCAUGCAG-UCG- -5'
12778 5' -53.3 NC_003387.1 + 44446 0.72 0.449622
Target:  5'- aCGCGcACGAGGCGCUGcGCGa-GGCg -3'
miRNA:   3'- aGUGUaUGCUCCGCGGCaUGCagUCG- -5'
12778 5' -53.3 NC_003387.1 + 24116 0.66 0.811592
Target:  5'- -gGCAUGCG-GGCGUCGg----CAGCu -3'
miRNA:   3'- agUGUAUGCuCCGCGGCaugcaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 26238 0.66 0.792207
Target:  5'- gUCGCcccgGCGAu-CGCCGUGCugaugGUCAGCa -3'
miRNA:   3'- -AGUGua--UGCUccGCGGCAUG-----CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 2272 0.67 0.782253
Target:  5'- gCGCcc-CGAGGUGCCcgaggGCGcCAGCg -3'
miRNA:   3'- aGUGuauGCUCCGCGGca---UGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 40564 0.67 0.751483
Target:  5'- -gGCGUuCGAGGCGCUGcagaaGC-UCGGCa -3'
miRNA:   3'- agUGUAuGCUCCGCGGCa----UGcAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.