miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 49943 0.66 0.839203
Target:  5'- cUCGa--ACGucGCGCCGUgcucgaucACGUCGGUg -3'
miRNA:   3'- -AGUguaUGCucCGCGGCA--------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 1112 0.66 0.80199
Target:  5'- gUCACAUgaGCGAcgcuagGGCGCacgguGUGC-UCGGCg -3'
miRNA:   3'- -AGUGUA--UGCU------CCGCGg----CAUGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 16083 0.66 0.80199
Target:  5'- cCACucg-GGGGCGCCGU-CGggcaucgCGGCg -3'
miRNA:   3'- aGUGuaugCUCCGCGGCAuGCa------GUCG- -5'
12778 5' -53.3 NC_003387.1 + 37571 0.66 0.80199
Target:  5'- gCGCGU-CGAGGUaGgUGUACG-CGGCa -3'
miRNA:   3'- aGUGUAuGCUCCG-CgGCAUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 51823 0.66 0.811592
Target:  5'- gCACAgcgcgaacACGAGcGCGCCGagcaggUACGUCuuGCc -3'
miRNA:   3'- aGUGUa-------UGCUC-CGCGGC------AUGCAGu-CG- -5'
12778 5' -53.3 NC_003387.1 + 3873 0.66 0.830208
Target:  5'- gCGCAccaggGCGuGcaCGCCGUGCGUCGcGCc -3'
miRNA:   3'- aGUGUa----UGCuCc-GCGGCAUGCAGU-CG- -5'
12778 5' -53.3 NC_003387.1 + 23821 0.67 0.77214
Target:  5'- gCAgAUACGugaGGGCGCCGcGCcgggacUCGGCg -3'
miRNA:   3'- aGUgUAUGC---UCCGCGGCaUGc-----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 16925 0.67 0.740963
Target:  5'- -gACAacAUGGGGCGCCGcUACGacguUCGGUa -3'
miRNA:   3'- agUGUa-UGCUCCGCGGC-AUGC----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 2272 0.67 0.782253
Target:  5'- gCGCcc-CGAGGUGCCcgaggGCGcCAGCg -3'
miRNA:   3'- aGUGuauGCUCCGCGGca---UGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 28877 0.67 0.782253
Target:  5'- cCGCGaGCGGcacGGCGCCGagucccgGCG-CGGCg -3'
miRNA:   3'- aGUGUaUGCU---CCGCGGCa------UGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 32367 0.67 0.740963
Target:  5'- uUCAag-GCGAGGUuguaGuuGUACGUCgcaGGCg -3'
miRNA:   3'- -AGUguaUGCUCCG----CggCAUGCAG---UCG- -5'
12778 5' -53.3 NC_003387.1 + 3623 0.67 0.781249
Target:  5'- gCGCGU-CGAGGUGCucgacuuCGUACGcCuGCg -3'
miRNA:   3'- aGUGUAuGCUCCGCG-------GCAUGCaGuCG- -5'
12778 5' -53.3 NC_003387.1 + 9335 0.67 0.77214
Target:  5'- aCACGaccaGCcGGGCGCCGUGCa--GGCg -3'
miRNA:   3'- aGUGUa---UGcUCCGCGGCAUGcagUCG- -5'
12778 5' -53.3 NC_003387.1 + 20512 0.67 0.77214
Target:  5'- gCGCA-GCGcGGCGUCGcgcuCGUCGGUg -3'
miRNA:   3'- aGUGUaUGCuCCGCGGCau--GCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 48381 0.67 0.76188
Target:  5'- gUCGCuUACGuuGCGCUGgUGCGccuucUCGGCg -3'
miRNA:   3'- -AGUGuAUGCucCGCGGC-AUGC-----AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15638 0.67 0.76188
Target:  5'- gCGCAcgGCGAGGuCGaCC--AUGUCGGCg -3'
miRNA:   3'- aGUGUa-UGCUCC-GC-GGcaUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 15386 0.67 0.760846
Target:  5'- gCGCAgcccgcgGCGGGG-GCuCGUccacggcACGUCGGCg -3'
miRNA:   3'- aGUGUa------UGCUCCgCG-GCA-------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 28432 0.67 0.758775
Target:  5'- aUCACGUGaucggcgcgcacgcCGAGGCGgCGgcagaucGCGgcgCAGCa -3'
miRNA:   3'- -AGUGUAU--------------GCUCCGCgGCa------UGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 12260 0.67 0.751483
Target:  5'- -gAUGUACuuGGCGCUGUACagcuUCGGCg -3'
miRNA:   3'- agUGUAUGcuCCGCGGCAUGc---AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 32413 0.67 0.740963
Target:  5'- aCACGUACcGGaCGCCGUugACGUagCAGCc -3'
miRNA:   3'- aGUGUAUGcUCcGCGGCA--UGCA--GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.