Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 51681 | 0.74 | 0.076582 |
Target: 5'- gUugCGGCccuUGCUGCGUGGCUggUGaCCCGc -3' miRNA: 3'- aGugGCCG---ACGACGCACCGG--AC-GGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 51223 | 0.67 | 0.268359 |
Target: 5'- -gACCGGCUGgUGCacgcugaccuugGGCCauaUGCCCa -3' miRNA: 3'- agUGGCCGACgACGca----------CCGG---ACGGGc -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 49989 | 1.07 | 0.000197 |
Target: 5'- uUCACCGGCUGCUGCGUGGCCUGCCCGc -3' miRNA: 3'- -AGUGGCCGACGACGCACCGGACGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 48932 | 0.67 | 0.245563 |
Target: 5'- uUUGCCGGCggguUGCUgGCGggcGGgCUGCUCGg -3' miRNA: 3'- -AGUGGCCG----ACGA-CGCa--CCgGACGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 47394 | 0.67 | 0.277675 |
Target: 5'- aUCACCGGCcGauuagGCGuUGGCC-GUCCa -3' miRNA: 3'- -AGUGGCCGaCga---CGC-ACCGGaCGGGc -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 46606 | 0.76 | 0.053378 |
Target: 5'- gCACCGGCaGgUGCGUGGUCuuggUGCCCa -3' miRNA: 3'- aGUGGCCGaCgACGCACCGG----ACGGGc -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 46117 | 0.74 | 0.083175 |
Target: 5'- --uCCGGCUGCUGCgGUGGCUcgggcgugaggUGCCgCGg -3' miRNA: 3'- aguGGCCGACGACG-CACCGG-----------ACGG-GC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 45971 | 0.68 | 0.205849 |
Target: 5'- cUCGCCGG-UGCcgaGgGUGGCCUGgUCGa -3' miRNA: 3'- -AGUGGCCgACGa--CgCACCGGACgGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 45377 | 0.74 | 0.078722 |
Target: 5'- uUUGCCGGCgguuaGCUGCGcccGGCC-GCCCGa -3' miRNA: 3'- -AGUGGCCGa----CGACGCa--CCGGaCGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 44504 | 0.66 | 0.298502 |
Target: 5'- cUCA-CGGCaGUUGCGUcuguucgugccgGGCC-GCCCGg -3' miRNA: 3'- -AGUgGCCGaCGACGCA------------CCGGaCGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 42968 | 0.7 | 0.154704 |
Target: 5'- gCcCCGGCaUGC-GCGUGaGCCUGgCCGa -3' miRNA: 3'- aGuGGCCG-ACGaCGCAC-CGGACgGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 36605 | 0.66 | 0.282429 |
Target: 5'- aC-CCGGCguucgacucgcgGCUGC-UGGCCgccgcgaUGCCCGa -3' miRNA: 3'- aGuGGCCGa-----------CGACGcACCGG-------ACGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 34504 | 0.66 | 0.294242 |
Target: 5'- aCGCCcGCcGCUGCGgcgccgcgauccucGGgCUGCCCGu -3' miRNA: 3'- aGUGGcCGaCGACGCa-------------CCgGACGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 34422 | 0.69 | 0.191092 |
Target: 5'- cUCGCCGGCauucCUGCGcagcaaacgcagccgGGCCUGCCg- -3' miRNA: 3'- -AGUGGCCGac--GACGCa--------------CCGGACGGgc -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 32300 | 0.67 | 0.270994 |
Target: 5'- gCACCGGCgGCUGCacaacCCgaUGCCCGa -3' miRNA: 3'- aGUGGCCGaCGACGcacc-GG--ACGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 32221 | 0.68 | 0.227814 |
Target: 5'- aCGCCGcGCUGCgcgaGCGcgacgagcUGGCCgaccGCCUGg -3' miRNA: 3'- aGUGGC-CGACGa---CGC--------ACCGGa---CGGGC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 31297 | 0.7 | 0.163058 |
Target: 5'- -aGCCGuaGCUGCUGCGccgGGCC-GCCgGg -3' miRNA: 3'- agUGGC--CGACGACGCa--CCGGaCGGgC- -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 30367 | 0.67 | 0.277675 |
Target: 5'- gCGCCGGgUGC-GCcugGGCCaGCCCc -3' miRNA: 3'- aGUGGCCgACGaCGca-CCGGaCGGGc -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 29693 | 0.67 | 0.260576 |
Target: 5'- cCGCCGGgcacguugaaCUGCUGCGUcgagccggugaugcgGGCCuUGCCg- -3' miRNA: 3'- aGUGGCC----------GACGACGCA---------------CCGG-ACGGgc -5' |
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12779 | 3' | -63.2 | NC_003387.1 | + | 27914 | 0.73 | 0.095383 |
Target: 5'- aCGCCGaGCUGCUGCGccaGGUCgGCCgCGa -3' miRNA: 3'- aGUGGC-CGACGACGCa--CCGGaCGG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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