miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 3' -63.2 NC_003387.1 + 45377 0.74 0.078722
Target:  5'- uUUGCCGGCgguuaGCUGCGcccGGCC-GCCCGa -3'
miRNA:   3'- -AGUGGCCGa----CGACGCa--CCGGaCGGGC- -5'
12779 3' -63.2 NC_003387.1 + 2253 0.67 0.277675
Target:  5'- aCACCaaGGg-GCUGCGUGGgCgccccgaggUGCCCGa -3'
miRNA:   3'- aGUGG--CCgaCGACGCACCgG---------ACGGGC- -5'
12779 3' -63.2 NC_003387.1 + 24846 0.67 0.277675
Target:  5'- gUCugCGGCcgGgUGCGUGGUggCUgGCUCGa -3'
miRNA:   3'- -AGugGCCGa-CgACGCACCG--GA-CGGGC- -5'
12779 3' -63.2 NC_003387.1 + 13510 0.66 0.305709
Target:  5'- uUCGCCGGUggagucGCUgacaGCGUcGGCCUggGCUCGc -3'
miRNA:   3'- -AGUGGCCGa-----CGA----CGCA-CCGGA--CGGGC- -5'
12779 3' -63.2 NC_003387.1 + 27439 0.71 0.125042
Target:  5'- gUCGCCcuGGCUGaCUGCccgauGUGcGaCCUGCCCGa -3'
miRNA:   3'- -AGUGG--CCGAC-GACG-----CAC-C-GGACGGGC- -5'
12779 3' -63.2 NC_003387.1 + 20508 0.71 0.135492
Target:  5'- aCACCGGCaacaGCgguaGCGaUGcGCCUGCCCc -3'
miRNA:   3'- aGUGGCCGa---CGa---CGC-AC-CGGACGGGc -5'
12779 3' -63.2 NC_003387.1 + 42968 0.7 0.154704
Target:  5'- gCcCCGGCaUGC-GCGUGaGCCUGgCCGa -3'
miRNA:   3'- aGuGGCCG-ACGaCGCAC-CGGACgGGC- -5'
12779 3' -63.2 NC_003387.1 + 26912 0.69 0.185262
Target:  5'- aCGCCGcGCUGCUGUuccuguucgccggGcUGGCCUGUCgGc -3'
miRNA:   3'- aGUGGC-CGACGACG-------------C-ACCGGACGGgC- -5'
12779 3' -63.2 NC_003387.1 + 24109 0.77 0.046279
Target:  5'- aUCGCCuGGCaUGCggGCGUcggcagcuaucccGGCCUGCCCGa -3'
miRNA:   3'- -AGUGG-CCG-ACGa-CGCA-------------CCGGACGGGC- -5'
12779 3' -63.2 NC_003387.1 + 32300 0.67 0.270994
Target:  5'- gCACCGGCgGCUGCacaacCCgaUGCCCGa -3'
miRNA:   3'- aGUGGCCGaCGACGcacc-GG--ACGGGC- -5'
12779 3' -63.2 NC_003387.1 + 15854 0.68 0.205849
Target:  5'- aCGCgGGCUGCaacgUGCGcgcguacaugUGG-CUGCCCGa -3'
miRNA:   3'- aGUGgCCGACG----ACGC----------ACCgGACGGGC- -5'
12779 3' -63.2 NC_003387.1 + 34422 0.69 0.191092
Target:  5'- cUCGCCGGCauucCUGCGcagcaaacgcagccgGGCCUGCCg- -3'
miRNA:   3'- -AGUGGCCGac--GACGCa--------------CCGGACGGgc -5'
12779 3' -63.2 NC_003387.1 + 46117 0.74 0.083175
Target:  5'- --uCCGGCUGCUGCgGUGGCUcgggcgugaggUGCCgCGg -3'
miRNA:   3'- aguGGCCGACGACG-CACCGG-----------ACGG-GC- -5'
12779 3' -63.2 NC_003387.1 + 4130 0.68 0.214952
Target:  5'- aCACCGcGCUGCguucacacgaucacUGCGUGuGCCUGgCgGu -3'
miRNA:   3'- aGUGGC-CGACG--------------ACGCAC-CGGACgGgC- -5'
12779 3' -63.2 NC_003387.1 + 27914 0.73 0.095383
Target:  5'- aCGCCGaGCUGCUGCGccaGGUCgGCCgCGa -3'
miRNA:   3'- aGUGGC-CGACGACGCa--CCGGaCGG-GC- -5'
12779 3' -63.2 NC_003387.1 + 18320 0.69 0.185741
Target:  5'- gCGcCCGGCaacgGCGUGGCCgucgUGCCCGc -3'
miRNA:   3'- aGU-GGCCGacgaCGCACCGG----ACGGGC- -5'
12779 3' -63.2 NC_003387.1 + 32221 0.68 0.227814
Target:  5'- aCGCCGcGCUGCgcgaGCGcgacgagcUGGCCgaccGCCUGg -3'
miRNA:   3'- aGUGGC-CGACGa---CGC--------ACCGGa---CGGGC- -5'
12779 3' -63.2 NC_003387.1 + 17151 0.67 0.277675
Target:  5'- gUCACCGGCggcccgcGCUGagcugGUGcGCC-GCCUGg -3'
miRNA:   3'- -AGUGGCCGa------CGACg----CAC-CGGaCGGGC- -5'
12779 3' -63.2 NC_003387.1 + 12455 0.72 0.118496
Target:  5'- uUCGCUGGCgGCgGCcUGGCCgcggGCCUGg -3'
miRNA:   3'- -AGUGGCCGaCGaCGcACCGGa---CGGGC- -5'
12779 3' -63.2 NC_003387.1 + 25824 0.71 0.13915
Target:  5'- -uGCuCGGCgGCcuggGCgGUGGCCUGCUCGg -3'
miRNA:   3'- agUG-GCCGaCGa---CG-CACCGGACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.