Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 3647 | 0.66 | 0.313048 |
Target: 5'- aCGCCuGCgcGCcGCGa-GCCUGCCCGg -3' miRNA: 3'- aGUGGcCGa-CGaCGCacCGGACGGGC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 4583 | 0.68 | 0.222143 |
Target: 5'- cUCGgUGGCgcGCUGCGcgcgGGUCUGCCaCGu -3' miRNA: 3'- -AGUgGCCGa-CGACGCa---CCGGACGG-GC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 45971 | 0.68 | 0.205849 |
Target: 5'- cUCGCCGG-UGCcgaGgGUGGCCUGgUCGa -3' miRNA: 3'- -AGUGGCCgACGa--CgCACCGGACgGGC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 31297 | 0.7 | 0.163058 |
Target: 5'- -aGCCGuaGCUGCUGCGccgGGCC-GCCgGg -3' miRNA: 3'- agUGGC--CGACGACGCa--CCGGaCGGgC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 4534 | 0.7 | 0.154704 |
Target: 5'- cCGCCGGUgcggGCaccuUGCG-GGCCUGCgCCu -3' miRNA: 3'- aGUGGCCGa---CG----ACGCaCCGGACG-GGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 6422 | 0.72 | 0.109273 |
Target: 5'- cCAgCGGCccGCUGCGccGCCUGCUCGg -3' miRNA: 3'- aGUgGCCGa-CGACGCacCGGACGGGC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 23300 | 0.73 | 0.103503 |
Target: 5'- gCGCgGGCcGCUGCGgcGGCCUccuccugcGCCCGg -3' miRNA: 3'- aGUGgCCGaCGACGCa-CCGGA--------CGGGC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 46606 | 0.76 | 0.053378 |
Target: 5'- gCACCGGCaGgUGCGUGGUCuuggUGCCCa -3' miRNA: 3'- aGUGGCCGaCgACGCACCGG----ACGGGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 49989 | 1.07 | 0.000197 |
Target: 5'- uUCACCGGCUGCUGCGUGGCCUGCCCGc -3' miRNA: 3'- -AGUGGCCGACGACGCACCGGACGGGC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 511 | 0.68 | 0.227814 |
Target: 5'- gUCAgCaGGCUGCUcaGC--GGCCUGCUCGa -3' miRNA: 3'- -AGUgG-CCGACGA--CGcaCCGGACGGGC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 23994 | 0.68 | 0.235958 |
Target: 5'- gCACCGcCUGCUcGCuccaccacuugagGGCCUGCCCu -3' miRNA: 3'- aGUGGCcGACGA-CGca-----------CCGGACGGGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 9811 | 0.66 | 0.305709 |
Target: 5'- -gACCGGCgcugcagGCUGCGcauuuugugcUGGCCcccgGCCUu -3' miRNA: 3'- agUGGCCGa------CGACGC----------ACCGGa---CGGGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 21670 | 0.66 | 0.289332 |
Target: 5'- gUCGCCGGUgccaucggcgccggUGCcGUGcUGGCCgccGCCCc -3' miRNA: 3'- -AGUGGCCG--------------ACGaCGC-ACCGGa--CGGGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 47394 | 0.67 | 0.277675 |
Target: 5'- aUCACCGGCcGauuagGCGuUGGCC-GUCCa -3' miRNA: 3'- -AGUGGCCGaCga---CGC-ACCGGaCGGGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 30367 | 0.67 | 0.277675 |
Target: 5'- gCGCCGGgUGC-GCcugGGCCaGCCCc -3' miRNA: 3'- aGUGGCCgACGaCGca-CCGGaCGGGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 7839 | 0.67 | 0.277675 |
Target: 5'- gCGcCCGGCgGCUGCGUcagcucGGCCaGCaCCu -3' miRNA: 3'- aGU-GGCCGaCGACGCA------CCGGaCG-GGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 51223 | 0.67 | 0.268359 |
Target: 5'- -gACCGGCUGgUGCacgcugaccuugGGCCauaUGCCCa -3' miRNA: 3'- agUGGCCGACgACGca----------CCGG---ACGGGc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 29693 | 0.67 | 0.260576 |
Target: 5'- cCGCCGGgcacguugaaCUGCUGCGUcgagccggugaugcgGGCCuUGCCg- -3' miRNA: 3'- aGUGGCC----------GACGACGCA---------------CCGG-ACGGgc -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 48932 | 0.67 | 0.245563 |
Target: 5'- uUUGCCGGCggguUGCUgGCGggcGGgCUGCUCGg -3' miRNA: 3'- -AGUGGCCG----ACGA-CGCa--CCgGACGGGC- -5' |
|||||||
12779 | 3' | -63.2 | NC_003387.1 | + | 13510 | 0.66 | 0.305709 |
Target: 5'- uUCGCCGGUggagucGCUgacaGCGUcGGCCUggGCUCGc -3' miRNA: 3'- -AGUGGCCGa-----CGA----CGCA-CCGGA--CGGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home