miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 9328 0.67 0.514279
Target:  5'- uCCGAGCACAcgaccaGCCgggCGCCGugcAGG-CGAg -3'
miRNA:   3'- cGGCUCGUGU------UGGa--GCGGC---UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 37805 0.67 0.514279
Target:  5'- cGCCGGuagccGCGCAGCCgucaCGUCGugcagcagcAGGUCGAg -3'
miRNA:   3'- -CGGCU-----CGUGUUGGa---GCGGC---------UCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 39352 0.67 0.503854
Target:  5'- uUCGAGaacaGCGACC-CGUCGAGGcCAAu -3'
miRNA:   3'- cGGCUCg---UGUUGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 40528 0.67 0.503854
Target:  5'- aCCGAGCAgCGACCUgC-CCGAGGgCGu -3'
miRNA:   3'- cGGCUCGU-GUUGGA-GcGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 9529 0.67 0.503854
Target:  5'- gGCCGucaAGCGguGCCUgcgcaagccgcCGCCGGGGUgGAu -3'
miRNA:   3'- -CGGC---UCGUguUGGA-----------GCGGCUCCAgUU- -5'
12779 5' -57.3 NC_003387.1 + 44899 0.67 0.503854
Target:  5'- cGCCGGGCGCGcuauccguaucGCgUCGCCGggcuGGGgCGAc -3'
miRNA:   3'- -CGGCUCGUGU-----------UGgAGCGGC----UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 51151 0.67 0.502817
Target:  5'- cGCCaGGGCGuuaggcgcuucgcCGuCCUCgggGCCGAGGUCGAa -3'
miRNA:   3'- -CGG-CUCGU-------------GUuGGAG---CGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 21468 0.67 0.493523
Target:  5'- cGCUG-GCGCAGCCcgCGCC--GGUCGGg -3'
miRNA:   3'- -CGGCuCGUGUUGGa-GCGGcuCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 11792 0.67 0.493523
Target:  5'- cGCUGuGCACGugUUCGUCGAguGGuUCAAg -3'
miRNA:   3'- -CGGCuCGUGUugGAGCGGCU--CC-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 30247 0.67 0.493523
Target:  5'- gGCCGGGUcguCGGggUCggCGCCGGGGUCGGg -3'
miRNA:   3'- -CGGCUCGu--GUU--GGa-GCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 45979 0.67 0.493523
Target:  5'- uGCCGAGggUGGCCUgGUCGAGGa--- -3'
miRNA:   3'- -CGGCUCguGUUGGAgCGGCUCCaguu -5'
12779 5' -57.3 NC_003387.1 + 3678 0.67 0.493523
Target:  5'- cGCCaGcAGCGCAACCgucgaGCCGgugaugcucAGGUCGAu -3'
miRNA:   3'- -CGG-C-UCGUGUUGGag---CGGC---------UCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 33739 0.67 0.493523
Target:  5'- cGCCGccAGCucguCGAUgCUCGCCGGGGUg-- -3'
miRNA:   3'- -CGGC--UCGu---GUUG-GAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 31018 0.67 0.493523
Target:  5'- gGUCG-GCGCGggccGCgCUCGCCGAGG-CGg -3'
miRNA:   3'- -CGGCuCGUGU----UG-GAGCGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 30930 0.67 0.493523
Target:  5'- cGCCGAGCu--GCC--GCCGcGGUCAAc -3'
miRNA:   3'- -CGGCUCGuguUGGagCGGCuCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 47758 0.67 0.493523
Target:  5'- uGCgCGAGCACGGCCUgaCCGGcuGGUCu- -3'
miRNA:   3'- -CG-GCUCGUGUUGGAgcGGCU--CCAGuu -5'
12779 5' -57.3 NC_003387.1 + 30061 0.67 0.493523
Target:  5'- -aCGAGCGCGcCCUgacggcCGCCGGGG-CGAg -3'
miRNA:   3'- cgGCUCGUGUuGGA------GCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 52316 0.67 0.483289
Target:  5'- cGCC-AGCACAGCCUCG--GGGGUgCGAg -3'
miRNA:   3'- -CGGcUCGUGUUGGAGCggCUCCA-GUU- -5'
12779 5' -57.3 NC_003387.1 + 4461 0.67 0.483289
Target:  5'- gGCCGAGC-CGACCgccgagccCGCCGcgaAGGcCGAg -3'
miRNA:   3'- -CGGCUCGuGUUGGa-------GCGGC---UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 4422 0.67 0.483289
Target:  5'- cGCCGAGCugGGCaaggcguUCGCCGAGccCGc -3'
miRNA:   3'- -CGGCUCGugUUGg------AGCGGCUCcaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.