miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 49313 0.66 0.550333
Target:  5'- uGCCGGGCACcaucgacagcaGgugcucgaucgggauGCC-CGCCGAGGcCAGc -3'
miRNA:   3'- -CGGCUCGUG-----------U---------------UGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 35643 0.66 0.546048
Target:  5'- gGCCGGGCGggcacuggcCGACCUCGaCCGcGGG-CGGu -3'
miRNA:   3'- -CGGCUCGU---------GUUGGAGC-GGC-UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 3292 0.66 0.546048
Target:  5'- cCCGA-CACGGCCgccgacucgggCGCCGAGGUg-- -3'
miRNA:   3'- cGGCUcGUGUUGGa----------GCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 35999 0.66 0.546048
Target:  5'- --aGGGCACGAUCgaCGgCGAGGUCGu -3'
miRNA:   3'- cggCUCGUGUUGGa-GCgGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 26915 0.66 0.546048
Target:  5'- cGCCGAGCAgGccgccACCgaggcCGCCGAGcggccgagaauGUCGAg -3'
miRNA:   3'- -CGGCUCGUgU-----UGGa----GCGGCUC-----------CAGUU- -5'
12779 5' -57.3 NC_003387.1 + 27340 0.66 0.546048
Target:  5'- cGUCGAGCAgccgcagccccuCGACCUCGCCGcucuuGG-CGc -3'
miRNA:   3'- -CGGCUCGU------------GUUGGAGCGGCu----CCaGUu -5'
12779 5' -57.3 NC_003387.1 + 7343 0.66 0.544978
Target:  5'- gGCCGGGCGCAGCUaacCGCCGGcaaaaacucgagcGcGUCGc -3'
miRNA:   3'- -CGGCUCGUGUUGGa--GCGGCU-------------C-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 29716 0.67 0.535382
Target:  5'- cGUCGAGC-CGgugaugcggGCCUUGCCGucGUCGg -3'
miRNA:   3'- -CGGCUCGuGU---------UGGAGCGGCucCAGUu -5'
12779 5' -57.3 NC_003387.1 + 15816 0.67 0.535382
Target:  5'- gGCUGAcgcGCACAGCgUCaCCGAGG-CGAu -3'
miRNA:   3'- -CGGCU---CGUGUUGgAGcGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 25014 0.67 0.535382
Target:  5'- gGCUGAuauGCAgCGGCCU-GUCGGGGUCGg -3'
miRNA:   3'- -CGGCU---CGU-GUUGGAgCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 8315 0.67 0.535382
Target:  5'- -gCGAGCACAGCgUCaGCCGcGG-CGAg -3'
miRNA:   3'- cgGCUCGUGUUGgAG-CGGCuCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 18569 0.67 0.535382
Target:  5'- gGCCGAGgGCGACgcccuggugCUCGUCGAGuUCGc -3'
miRNA:   3'- -CGGCUCgUGUUG---------GAGCGGCUCcAGUu -5'
12779 5' -57.3 NC_003387.1 + 51334 0.67 0.531136
Target:  5'- uUCGAGCGCGACCccgacccgcugagCGCCGAcGG-CGAg -3'
miRNA:   3'- cGGCUCGUGUUGGa------------GCGGCU-CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 8055 0.67 0.52479
Target:  5'- uGgCGAGCaccgGCAGCCccucggccaggaUCGCCGAGGcCGc -3'
miRNA:   3'- -CgGCUCG----UGUUGG------------AGCGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 13334 0.67 0.52479
Target:  5'- cGCCaGGCGCAcgagcACCUCGUacaccuCGGGGUUAu -3'
miRNA:   3'- -CGGcUCGUGU-----UGGAGCG------GCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 1514 0.67 0.52479
Target:  5'- gGCCGAcGUGCAggcucagcACCUCgguGCCGAGGaUCGc -3'
miRNA:   3'- -CGGCU-CGUGU--------UGGAG---CGGCUCC-AGUu -5'
12779 5' -57.3 NC_003387.1 + 30221 0.67 0.514279
Target:  5'- cGUCGAGCGC-GCC--GCCGAGGcCGu -3'
miRNA:   3'- -CGGCUCGUGuUGGagCGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 9328 0.67 0.514279
Target:  5'- uCCGAGCACAcgaccaGCCgggCGCCGugcAGG-CGAg -3'
miRNA:   3'- cGGCUCGUGU------UGGa--GCGGC---UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 47588 0.67 0.514279
Target:  5'- cGCCGAGCGCc-CCUCGUCGcgugcGG-CGAu -3'
miRNA:   3'- -CGGCUCGUGuuGGAGCGGCu----CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 50460 0.67 0.514279
Target:  5'- cGUCGAGC-CGACCcCgGCCcgcGAGGUCGu -3'
miRNA:   3'- -CGGCUCGuGUUGGaG-CGG---CUCCAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.