miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 5184 0.84 0.035848
Target:  5'- -aCGAGCACGACCUCGCCGuaacGGUCGc -3'
miRNA:   3'- cgGCUCGUGUUGGAGCGGCu---CCAGUu -5'
12779 5' -57.3 NC_003387.1 + 5426 0.7 0.352579
Target:  5'- cGCCGAGgACAA-CUCGaCCGAGGg--- -3'
miRNA:   3'- -CGGCUCgUGUUgGAGC-GGCUCCaguu -5'
12779 5' -57.3 NC_003387.1 + 5823 0.66 0.566492
Target:  5'- gGCCGuGCACGacgACCUCgggcugcGCCGcAGGUgGGg -3'
miRNA:   3'- -CGGCuCGUGU---UGGAG-------CGGC-UCCAgUU- -5'
12779 5' -57.3 NC_003387.1 + 6790 0.7 0.352579
Target:  5'- gGCCGAGCGCGACauggUCGCCcugcGGcUCAAg -3'
miRNA:   3'- -CGGCUCGUGUUGg---AGCGGcu--CC-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 7343 0.66 0.544978
Target:  5'- gGCCGGGCGCAGCUaacCGCCGGcaaaaacucgagcGcGUCGc -3'
miRNA:   3'- -CGGCUCGUGUUGGa--GCGGCU-------------C-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 7806 0.77 0.116722
Target:  5'- gGCCGAGCuGCAacGCCUggcgGCCGAGGUCGc -3'
miRNA:   3'- -CGGCUCG-UGU--UGGAg---CGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 7940 0.69 0.396332
Target:  5'- cGCgCGGGC-CAGCUU-GUCGAGGUCGGg -3'
miRNA:   3'- -CG-GCUCGuGUUGGAgCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 8055 0.67 0.52479
Target:  5'- uGgCGAGCaccgGCAGCCccucggccaggaUCGCCGAGGcCGc -3'
miRNA:   3'- -CgGCUCG----UGUUGG------------AGCGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 8088 0.66 0.567574
Target:  5'- uGCCGgucGGCGcCAACC-CGcCCGAGGgCGAg -3'
miRNA:   3'- -CGGC---UCGU-GUUGGaGC-GGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 8315 0.67 0.535382
Target:  5'- -gCGAGCACAGCgUCaGCCGcGG-CGAg -3'
miRNA:   3'- cgGCUCGUGUUGgAG-CGGCuCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 8913 0.71 0.289944
Target:  5'- cGCCGAucGUGCAGCaCUCGUCGAGGa--- -3'
miRNA:   3'- -CGGCU--CGUGUUG-GAGCGGCUCCaguu -5'
12779 5' -57.3 NC_003387.1 + 9328 0.67 0.514279
Target:  5'- uCCGAGCACAcgaccaGCCgggCGCCGugcAGG-CGAg -3'
miRNA:   3'- cGGCUCGUGU------UGGa--GCGGC---UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 9332 0.66 0.589308
Target:  5'- cCCGAGguCGACgUCGUCGAGcaccaggacGUCGAc -3'
miRNA:   3'- cGGCUCguGUUGgAGCGGCUC---------CAGUU- -5'
12779 5' -57.3 NC_003387.1 + 9529 0.67 0.503854
Target:  5'- gGCCGucaAGCGguGCCUgcgcaagccgcCGCCGGGGUgGAu -3'
miRNA:   3'- -CGGC---UCGUguUGGA-----------GCGGCUCCAgUU- -5'
12779 5' -57.3 NC_003387.1 + 10015 0.68 0.463136
Target:  5'- gGCCGGGCgACGacgacgacgaGCCgaagcgCGCCGAGGgcgCGGu -3'
miRNA:   3'- -CGGCUCG-UGU----------UGGa-----GCGGCUCCa--GUU- -5'
12779 5' -57.3 NC_003387.1 + 10642 0.68 0.433759
Target:  5'- aGCCGGGCacccGCAGCaCgcgCGCC-AGGUCGu -3'
miRNA:   3'- -CGGCUCG----UGUUG-Ga--GCGGcUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 11406 0.68 0.423261
Target:  5'- cGCCuGGCACAuggcgaugagguuGCgCUCGUCGAGGUUu- -3'
miRNA:   3'- -CGGcUCGUGU-------------UG-GAGCGGCUCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 11792 0.67 0.493523
Target:  5'- cGCUGuGCACGugUUCGUCGAguGGuUCAAg -3'
miRNA:   3'- -CGGCuCGUGUugGAGCGGCU--CC-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 12154 0.69 0.405493
Target:  5'- uGCCGAGCuucuGCAgcGCCUCgaacGCCucgGGGGUCAc -3'
miRNA:   3'- -CGGCUCG----UGU--UGGAG----CGG---CUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 12300 0.71 0.304743
Target:  5'- gGCCGGGC-CGguucGCCgUCGCCGAcguaGGUCAc -3'
miRNA:   3'- -CGGCUCGuGU----UGG-AGCGGCU----CCAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.