miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 156 0.73 0.236376
Target:  5'- cGCCGAGCugGGCCUgcugGCCGAcGG-CAAg -3'
miRNA:   3'- -CGGCUCGugUUGGAg---CGGCU-CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 464 0.66 0.567574
Target:  5'- cGCuCGGGCGCGGCgUUGCCGucaGUCu- -3'
miRNA:   3'- -CG-GCUCGUGUUGgAGCGGCuc-CAGuu -5'
12779 5' -57.3 NC_003387.1 + 617 0.66 0.556781
Target:  5'- gGCCGAGCagggcgaggGCAGCgUCGCCGccgcGG-CAGc -3'
miRNA:   3'- -CGGCUCG---------UGUUGgAGCGGCu---CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 1447 0.73 0.236376
Target:  5'- gGCuCGGGguCGucguCCUCGUCGAGGUCGu -3'
miRNA:   3'- -CG-GCUCguGUu---GGAGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 1514 0.67 0.52479
Target:  5'- gGCCGAcGUGCAggcucagcACCUCgguGCCGAGGaUCGc -3'
miRNA:   3'- -CGGCU-CGUGU--------UGGAG---CGGCUCC-AGUu -5'
12779 5' -57.3 NC_003387.1 + 1614 0.73 0.236376
Target:  5'- gGCCGGGCGCGugugggcaGCCUCGCgCG-GGUUg- -3'
miRNA:   3'- -CGGCUCGUGU--------UGGAGCG-GCuCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 1782 0.66 0.567574
Target:  5'- cCCGAGCugAaaGCC-CGCa-AGGUCAAg -3'
miRNA:   3'- cGGCUCGugU--UGGaGCGgcUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 2252 0.7 0.344248
Target:  5'- uGCCGA---CGACCUCgcggGCCGGGGUCGg -3'
miRNA:   3'- -CGGCUcguGUUGGAG----CGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 2601 0.66 0.567574
Target:  5'- gGCCGcAGUACGcCCUCGaaaCGuGGGUCGc -3'
miRNA:   3'- -CGGC-UCGUGUuGGAGCg--GC-UCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 2688 0.73 0.224349
Target:  5'- -aCGAGCuuGACCUCGgCGAGGUUg- -3'
miRNA:   3'- cgGCUCGugUUGGAGCgGCUCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 2904 0.68 0.473158
Target:  5'- cGCCGGGCGCGGCag-GCCGcGGG-CGAg -3'
miRNA:   3'- -CGGCUCGUGUUGgagCGGC-UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 3159 0.69 0.378415
Target:  5'- -gCGGGCGC-ACCUCGgCGAGGcCGu -3'
miRNA:   3'- cgGCUCGUGuUGGAGCgGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 3292 0.66 0.546048
Target:  5'- cCCGA-CACGGCCgccgacucgggCGCCGAGGUg-- -3'
miRNA:   3'- cGGCUcGUGUUGGa----------GCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 3678 0.67 0.493523
Target:  5'- cGCCaGcAGCGCAACCgucgaGCCGgugaugcucAGGUCGAu -3'
miRNA:   3'- -CGG-C-UCGUGUUGGag---CGGC---------UCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 4422 0.67 0.483289
Target:  5'- cGCCGAGCugGGCaaggcguUCGCCGAGccCGc -3'
miRNA:   3'- -CGGCUCGugUUGg------AGCGGCUCcaGUu -5'
12779 5' -57.3 NC_003387.1 + 4461 0.67 0.483289
Target:  5'- gGCCGAGC-CGACCgccgagccCGCCGcgaAGGcCGAg -3'
miRNA:   3'- -CGGCUCGuGUUGGa-------GCGGC---UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 4494 0.68 0.443432
Target:  5'- aCCGGGCGCGACacgaUCGUgcGGGUCAc -3'
miRNA:   3'- cGGCUCGUGUUGg---AGCGgcUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 4707 0.68 0.463136
Target:  5'- cGUCGAGCAgGGCUgggaaccgGCCGAGGcCGAg -3'
miRNA:   3'- -CGGCUCGUgUUGGag------CGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 4926 0.68 0.443432
Target:  5'- uGCCcGGCGCGGCgUCGCgCGuuGUCGAa -3'
miRNA:   3'- -CGGcUCGUGUUGgAGCG-GCucCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 4966 0.68 0.453226
Target:  5'- aGCCGgucaGGC-CGugCUCGCgcaGAGGUCGGu -3'
miRNA:   3'- -CGGC----UCGuGUugGAGCGg--CUCCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.