miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 32671 0.81 0.066042
Target:  5'- cGCCGAGCugAACCUCGCCGcgcacGUCGu -3'
miRNA:   3'- -CGGCUCGugUUGGAGCGGCuc---CAGUu -5'
12779 5' -57.3 NC_003387.1 + 5426 0.7 0.352579
Target:  5'- cGCCGAGgACAA-CUCGaCCGAGGg--- -3'
miRNA:   3'- -CGGCUCgUGUUgGAGC-GGCUCCaguu -5'
12779 5' -57.3 NC_003387.1 + 24548 0.7 0.36105
Target:  5'- gGCCGAGCGaAACUgUCGCCGGGuUCGGg -3'
miRNA:   3'- -CGGCUCGUgUUGG-AGCGGCUCcAGUU- -5'
12779 5' -57.3 NC_003387.1 + 43203 0.66 0.589308
Target:  5'- gGCCGGGUACGcgGCgaUCGgCGAGGUg-- -3'
miRNA:   3'- -CGGCUCGUGU--UGg-AGCgGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 7806 0.77 0.116722
Target:  5'- gGCCGAGCuGCAacGCCUggcgGCCGAGGUCGc -3'
miRNA:   3'- -CGGCUCG-UGU--UGGAg---CGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 21705 0.76 0.130514
Target:  5'- cGgCGAGCGCGGCCcgCGCCGAccuGGUCGu -3'
miRNA:   3'- -CgGCUCGUGUUGGa-GCGGCU---CCAGUu -5'
12779 5' -57.3 NC_003387.1 + 48525 0.73 0.217958
Target:  5'- gGCCGA-CACGcgguggccgaagcACCgCGCCGAGGUCAc -3'
miRNA:   3'- -CGGCUcGUGU-------------UGGaGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 2688 0.73 0.224349
Target:  5'- -aCGAGCuuGACCUCGgCGAGGUUg- -3'
miRNA:   3'- cgGCUCGugUUGGAGCgGCUCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 24720 0.73 0.236376
Target:  5'- cGCCaAGCGCGugCUCGCCGAaaUCGAg -3'
miRNA:   3'- -CGGcUCGUGUugGAGCGGCUccAGUU- -5'
12779 5' -57.3 NC_003387.1 + 37713 0.71 0.312357
Target:  5'- cGCCGAcccGCGCGACaa-GCCGAGGgcggCAAc -3'
miRNA:   3'- -CGGCU---CGUGUUGgagCGGCUCCa---GUU- -5'
12779 5' -57.3 NC_003387.1 + 33581 0.71 0.294323
Target:  5'- uGCUGAGCGCGugCgcgacgaagauccCGCCGAGGUg-- -3'
miRNA:   3'- -CGGCUCGUGUugGa------------GCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 156 0.73 0.236376
Target:  5'- cGCCGAGCugGGCCUgcugGCCGAcGG-CAAg -3'
miRNA:   3'- -CGGCUCGugUUGGAg---CGGCU-CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 50089 0.8 0.074099
Target:  5'- aCCGAGCACGACacgaUCGCCGAGGcccgCGAg -3'
miRNA:   3'- cGGCUCGUGUUGg---AGCGGCUCCa---GUU- -5'
12779 5' -57.3 NC_003387.1 + 29677 0.71 0.312357
Target:  5'- cGCCGAcGUcgacguCGACgUgGCCGAGGUCGAg -3'
miRNA:   3'- -CGGCU-CGu-----GUUGgAgCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 49542 0.8 0.077136
Target:  5'- cCCGAGCaggcucaccccgauuACGGCCUCGCCGAGGUg-- -3'
miRNA:   3'- cGGCUCG---------------UGUUGGAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 34716 0.73 0.230296
Target:  5'- -gCG-GCGCGACCUgGCCGAgcuGGUCAAg -3'
miRNA:   3'- cgGCuCGUGUUGGAgCGGCU---CCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 49736 0.71 0.312357
Target:  5'- aUCGAGCAgcGCCUCGUCGAGGcccCGAg -3'
miRNA:   3'- cGGCUCGUguUGGAGCGGCUCCa--GUU- -5'
12779 5' -57.3 NC_003387.1 + 6790 0.7 0.352579
Target:  5'- gGCCGAGCGCGACauggUCGCCcugcGGcUCAAg -3'
miRNA:   3'- -CGGCUCGUGUUGg---AGCGGcu--CC-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 13173 0.79 0.080752
Target:  5'- gGCCGAGCGCGACCUgGCCGAcGcGaUCGAg -3'
miRNA:   3'- -CGGCUCGUGUUGGAgCGGCU-C-C-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 21670 0.75 0.154039
Target:  5'- gGCCGAGCACGugUUCGCCGAcgcccuGGcCGc -3'
miRNA:   3'- -CGGCUCGUGUugGAGCGGCU------CCaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.